nsv820195
- Organism: Homo sapiens
- Study:nstd43 (Kim et al. 2009)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:24,050
- Publication(s):Kim et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 495 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 495 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 201 SVs from 27 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv820195 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 54,686,161 | 54,710,210 |
| nsv820195 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 56,445,921 | 56,469,970 |
| nsv820195 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000010.9 | Chr10 | 56,115,927 | 56,139,976 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1418695 | copy number loss | SAMN00002681 | Oligo aCGH | Probe signal intensity | 1,333 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1418695 | Remapped | Perfect | NC_000010.11:g.(?_ 54686161)_(5471021 0_?)del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,686,161 | 54,710,210 |
| nssv1418695 | Remapped | Perfect | NC_000010.10:g.(?_ 56445921)_(5646997 0_?)del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 56,445,921 | 56,469,970 |
| nssv1418695 | Submitted genomic | NC_000010.9:g.(?_5 6115927)_(56139976 _?)del | NCBI36 (hg18) | NC_000010.9 | Chr10 | 56,115,927 | 56,139,976 |