nsv820227
- Organism: Homo sapiens
- Study:nstd43 (Kim et al. 2009)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:26,708
- Publication(s):Kim et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 890 SVs from 92 studies. See in: genome view
Overlapping variant regions from other studies: 890 SVs from 92 studies. See in: genome view
Overlapping variant regions from other studies: 414 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv820227 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 18,924,053 | 18,950,760 |
| nsv820227 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000011.9 | Chr11 | 18,945,600 | 18,972,307 |
| nsv820227 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000011.8 | Chr11 | 18,902,176 | 18,928,883 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1418705 | copy number gain | SAMN00002681 | Oligo aCGH | Probe signal intensity | 1,333 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1418705 | Remapped | Perfect | NC_000011.10:g.(?_ 18924053)_(1895076 0_?)dup | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 18,924,053 | 18,950,760 |
| nssv1418705 | Remapped | Perfect | NC_000011.9:g.(?_1 8945600)_(18972307 _?)dup | GRCh37.p13 | First Pass | NC_000011.9 | Chr11 | 18,945,600 | 18,972,307 |
| nssv1418705 | Submitted genomic | NC_000011.8:g.(?_1 8902176)_(18928883 _?)dup | NCBI36 (hg18) | NC_000011.8 | Chr11 | 18,902,176 | 18,928,883 |