nsv820280
- Organism: Homo sapiens
- Study:nstd43 (Kim et al. 2009)
- Variant Type:insertion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:159
- Publication(s):Kim et al. 2009
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 397 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 22 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 397 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 204 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv820280 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 1,206,512 | 1,206,670 |
| nsv820280 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187655.1 | Chr8|NT_18 7655.1 | 65,066 | 65,224 |
| nsv820280 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 1,156,512 | 1,156,670 |
| nsv820280 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 1,143,919 | 1,144,077 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1418892 | insertion | SAMN00002681 | Sequencing | Paired-end mapping | 1,333 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1418892 | Remapped | Perfect | NT_187655.1:g.(650 66_?)_(?_65224)ins 1371 | GRCh38.p12 | Second Pass | NT_187655.1 | Chr8|NT_18 7655.1 | 65,066 | 65,224 |
| nssv1418892 | Remapped | Perfect | NC_000008.11:g.(12 06512_?)_(?_120667 0)ins1371 | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 1,206,512 | 1,206,670 |
| nssv1418892 | Remapped | Perfect | NC_000008.10:g.(11 56512_?)_(?_115667 0)ins1371 | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 1,156,512 | 1,156,670 |
| nssv1418892 | Submitted genomic | NC_000008.9:g.(114 3919_?)_(?_1144077 )ins1371 | NCBI36 (hg18) | NC_000008.9 | Chr8 | 1,143,919 | 1,144,077 |