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dbVar

Database of genomic structural variation

nsv821120

Organism: Homo sapiens

Study:nstd65 (Ju et al. 2010)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:29,987

Publication(s):Ju et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 179 SVs from 44 studies. See in: genome view

Remapped(Score: Good):206,380,831-206,410,817

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv821120	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	206,380,831	206,410,817
nsv821120	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	206,554,186	206,584,177
nsv821120	Remapped	Good	GRCh37.p13	PATCHES	Second Pass	NW_003871057.1	Chr1\|NW_00 3871057.1	371,685	401,671
nsv821120	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	204,620,809	204,650,800

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1420891	duplication	NA10851	Sequencing	Read depth	1,299

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1420891	Remapped	Good	NC_000001.11:g.(?_ 206380831)_(206410 817_?)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	206,380,831	206,410,817
nssv1420891	Remapped	Good	NW_003871057.1:g.( ?_371685)_(401671_ ?)dup	GRCh37.p13	Second Pass	NW_003871057.1	Chr1\|NW_00 3871057.1	371,685	401,671
nssv1420891	Remapped	Perfect	NC_000001.10:g.(?_ 206554186)_(206584 177_?)dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	206,554,186	206,584,177
nssv1420891	Submitted genomic		NC_000001.9:g.(?_2 04620809)_(2046508 00_?)dup	NCBI36 (hg18)		NC_000001.9	Chr1	204,620,809	204,650,800

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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