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dbVar

Database of genomic structural variation

nsv821156

Organism: Homo sapiens

Study:nstd65 (Ju et al. 2010)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:17,792

Publication(s):Ju et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1820 SVs from 70 studies. See in: genome view

Remapped(Score: Perfect):1,521,940-1,539,731

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv821156	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	1,521,940	1,539,731
nsv821156	Remapped	Perfect	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187529.1	Chr2\|NT_18 7529.1	204,311	222,102
nsv821156	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	1,525,712	1,543,503
nsv821156	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	1,504,719	1,522,510

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1419937	deletion	NA10851	Sequencing	Read depth	1,299

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1419937	Remapped	Perfect	NT_187529.1:g.(?_2 04311)_(222102_?)d el	GRCh38.p12	Second Pass	NT_187529.1	Chr2\|NT_18 7529.1	204,311	222,102
nssv1419937	Remapped	Perfect	NC_000002.12:g.(?_ 1521940)_(1539731_ ?)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	1,521,940	1,539,731
nssv1419937	Remapped	Perfect	NC_000002.11:g.(?_ 1525712)_(1543503_ ?)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	1,525,712	1,543,503
nssv1419937	Submitted genomic		NC_000002.10:g.(?_ 1504719)_(1522510_ ?)del	NCBI36 (hg18)		NC_000002.10	Chr2	1,504,719	1,522,510

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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