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dbVar

Database of genomic structural variation

nsv821446

Organism: Homo sapiens

Study:nstd65 (Ju et al. 2010)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI36 (hg18)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:59,741

Publication(s):Ju et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 834 SVs from 89 studies. See in: genome view

Remapped(Score: Perfect):49,687,948-49,747,688

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv821446	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	49,687,948	49,747,688
nsv821446	Remapped	Good	GRCh38.p12	PATCHES	Second Pass	NW_019805495.1	Chr11\|NW_0 19805495.1	152,129	211,837
nsv821446	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	49,709,500	49,769,240
nsv821446	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	49,666,076	49,725,816

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1420944	deletion	NA10851	Sequencing	Read depth	1,299

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1420944	Remapped	Good	NW_019805495.1:g.( ?_152129)_(211837_ ?)del	GRCh38.p12	Second Pass	NW_019805495.1	Chr11\|NW_0 19805495.1	152,129	211,837
nssv1420944	Remapped	Perfect	NC_000011.10:g.(?_ 49687948)_(4974768 8_?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	49,687,948	49,747,688
nssv1420944	Remapped	Perfect	NC_000011.9:g.(?_4 9709500)_(49769240 _?)del	GRCh37.p13	First Pass	NC_000011.9	Chr11	49,709,500	49,769,240
nssv1420944	Submitted genomic		NC_000011.8:g.(?_4 9666076)_(49725816 _?)del	NCBI36 (hg18)		NC_000011.8	Chr11	49,666,076	49,725,816

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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