nsv821635
- Organism: Homo sapiens
- Study:nstd66 (Sebat et al. 2004)
- Variant Type:copy number variation
- Method Type:ROMA
- Submitted on:NCBI35 (hg17)
- Variant Calls:6
- Validation:Not tested
- Clinical Assertions: No
- Region Size:285,235
- Publication(s):Sebat et al. 2004
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1467 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 1467 SVs from 98 studies. See in: genome view
Overlapping variant regions from other studies: 89 SVs from 13 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv821635 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000004.12 | Chr4 | 34,807,488 | 35,092,722 |
nsv821635 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000004.11 | Chr4 | 34,809,110 | 35,094,344 |
nsv821635 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000004.9 | Chr4 | 34,631,676 | 34,916,910 |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv1421359 | copy number loss | ROMA | Probe signal intensity |
nssv1421360 | copy number loss | ROMA | Probe signal intensity |
nssv1421361 | copy number loss | ROMA | Probe signal intensity |
nssv1421362 | copy number loss | ROMA | Probe signal intensity |
nssv1421364 | copy number loss | ROMA | Probe signal intensity |
nssv1421365 | copy number loss | ROMA | Probe signal intensity |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv1421359 | Remapped | Perfect | NC_000004.12:g.(?_ 34807488)_(3509272 2_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 34,807,488 | 35,092,722 |
nssv1421360 | Remapped | Perfect | NC_000004.12:g.(?_ 34807488)_(3509272 2_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 34,807,488 | 35,092,722 |
nssv1421361 | Remapped | Perfect | NC_000004.12:g.(?_ 34807488)_(3509272 2_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 34,807,488 | 35,092,722 |
nssv1421362 | Remapped | Perfect | NC_000004.12:g.(?_ 34807488)_(3509272 2_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 34,807,488 | 35,092,722 |
nssv1421364 | Remapped | Perfect | NC_000004.12:g.(?_ 34807488)_(3509272 2_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 34,807,488 | 35,092,722 |
nssv1421365 | Remapped | Perfect | NC_000004.12:g.(?_ 34807488)_(3509272 2_?)del | GRCh38.p12 | First Pass | NC_000004.12 | Chr4 | 34,807,488 | 35,092,722 |
nssv1421359 | Remapped | Perfect | NC_000004.11:g.(?_ 34809110)_(3509434 4_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 34,809,110 | 35,094,344 |
nssv1421360 | Remapped | Perfect | NC_000004.11:g.(?_ 34809110)_(3509434 4_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 34,809,110 | 35,094,344 |
nssv1421361 | Remapped | Perfect | NC_000004.11:g.(?_ 34809110)_(3509434 4_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 34,809,110 | 35,094,344 |
nssv1421362 | Remapped | Perfect | NC_000004.11:g.(?_ 34809110)_(3509434 4_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 34,809,110 | 35,094,344 |
nssv1421364 | Remapped | Perfect | NC_000004.11:g.(?_ 34809110)_(3509434 4_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 34,809,110 | 35,094,344 |
nssv1421365 | Remapped | Perfect | NC_000004.11:g.(?_ 34809110)_(3509434 4_?)del | GRCh37.p13 | First Pass | NC_000004.11 | Chr4 | 34,809,110 | 35,094,344 |
nssv1421359 | Submitted genomic | NC_000004.9:g.(?_3 4631676)_(34916910 _?)del | NCBI35 (hg17) | NC_000004.9 | Chr4 | 34,631,676 | 34,916,910 | ||
nssv1421360 | Submitted genomic | NC_000004.9:g.(?_3 4631676)_(34916910 _?)del | NCBI35 (hg17) | NC_000004.9 | Chr4 | 34,631,676 | 34,916,910 | ||
nssv1421361 | Submitted genomic | NC_000004.9:g.(?_3 4631676)_(34916910 _?)del | NCBI35 (hg17) | NC_000004.9 | Chr4 | 34,631,676 | 34,916,910 | ||
nssv1421362 | Submitted genomic | NC_000004.9:g.(?_3 4631676)_(34916910 _?)del | NCBI35 (hg17) | NC_000004.9 | Chr4 | 34,631,676 | 34,916,910 | ||
nssv1421364 | Submitted genomic | NC_000004.9:g.(?_3 4631676)_(34916910 _?)del | NCBI35 (hg17) | NC_000004.9 | Chr4 | 34,631,676 | 34,916,910 | ||
nssv1421365 | Submitted genomic | NC_000004.9:g.(?_3 4631676)_(34916910 _?)del | NCBI35 (hg17) | NC_000004.9 | Chr4 | 34,631,676 | 34,916,910 |