nsv821661
- Organism: Homo sapiens
- Study:nstd66 (Sebat et al. 2004)
- Variant Type:copy number variation
- Method Type:ROMA
- Submitted on:NCBI35 (hg17)
- Variant Calls:12
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,935,040
- Publication(s):Sebat et al. 2004
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 8318 SVs from 109 studies. See in: genome view
Overlapping variant regions from other studies: 9771 SVs from 110 studies. See in: genome view
Overlapping variant regions from other studies: 10903 SVs from 109 studies. See in: genome view
Overlapping variant regions from other studies: 2941 SVs from 101 studies. See in: genome view
Overlapping variant regions from other studies: 234 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv821661 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nsv821661 | Remapped | Pass | GRCh38.p12 | Primary Assembly | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nsv821661 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nsv821661 | Remapped | Pass | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nsv821661 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv1421217 | copy number gain | ROMA | Probe signal intensity |
| nssv1421218 | copy number gain | ROMA | Probe signal intensity |
| nssv1421219 | copy number gain | ROMA | Probe signal intensity |
| nssv1421220 | copy number gain | ROMA | Probe signal intensity |
| nssv1421221 | copy number gain | ROMA | Probe signal intensity |
| nssv1421222 | copy number gain | ROMA | Probe signal intensity |
| nssv1421223 | copy number gain | ROMA | Probe signal intensity |
| nssv1421225 | copy number gain | ROMA | Probe signal intensity |
| nssv1421226 | copy number gain | ROMA | Probe signal intensity |
| nssv1421227 | copy number gain | ROMA | Probe signal intensity |
| nssv1421228 | copy number gain | ROMA | Probe signal intensity |
| nssv1421229 | copy number gain | ROMA | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1421217 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421218 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421219 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421220 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421221 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421222 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421223 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421225 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421226 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421227 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421228 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421229 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 38,836,770 | 41,948,400 |
| nssv1421217 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421218 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421219 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421220 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421221 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421222 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421223 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421225 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421226 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421227 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421228 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421229 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | Second Pass | NC_000009.12 | Chr9 | 39,015,771 | 42,407,076 |
| nssv1421217 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421218 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421219 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421220 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421221 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421222 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421223 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421225 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421226 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421227 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421228 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421229 | Remapped | Pass | NC_000009.12:g.(?_ 38836770)_(4194840 0_?)dupNC_000009.1 2:g.(?_39015771)_( 42407076_?)dupNC_0 00009.12:g.(?_6128 1967)_(67217006_?) dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 61,281,967 | 67,217,006 |
| nssv1421217 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421218 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421219 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421220 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421221 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421222 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421223 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421225 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421226 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421227 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421228 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421229 | Remapped | Pass | NC_000009.11:g.(?_ 38836767)_(4094034 1_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 38,836,767 | 40,940,341 |
| nssv1421217 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421218 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421219 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421220 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421221 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421222 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421223 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421225 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421226 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421227 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421228 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 | ||
| nssv1421229 | Submitted genomic | NC_000009.9:g.(?_3 8826767)_(40751126 _?)dup | NCBI35 (hg17) | NC_000009.9 | Chr9 | 38,826,767 | 40,751,126 |