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dbVar

Database of genomic structural variation

nsv821662

Organism: Homo sapiens

Study:nstd66 (Sebat et al. 2004)
Variant Type:copy number variation
Method Type:ROMA
Submitted on:NCBI35 (hg17)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:850,640

Publication(s):Sebat et al. 2004

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 3768 SVs from 90 studies. See in: genome view

Remapped(Score: Pass):42,007,884-42,858,523

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv821662	Remapped	Pass	GRCh38.p12	Primary Assembly	First Pass	NC_000009.12	Chr9	42,007,884	42,858,523
nsv821662	Remapped	Pass	GRCh37.p13	Primary Assembly	First Pass	NC_000009.11	Chr9	43,385,251	44,867,145
nsv821662	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000009.9	Chr9	42,671,740	43,945,910

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv1421230	copy number gain	ROMA	Probe signal intensity
nssv1421231	copy number gain	ROMA	Probe signal intensity
nssv1421232	copy number gain	ROMA	Probe signal intensity
nssv1421233	copy number gain	ROMA	Probe signal intensity
nssv1421234	copy number gain	ROMA	Probe signal intensity

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1421230	Remapped	Pass	NC_000009.12:g.(?_ 42007884)_(4285852 3_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	42,007,884	42,858,523
nssv1421231	Remapped	Pass	NC_000009.12:g.(?_ 42007884)_(4285852 3_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	42,007,884	42,858,523
nssv1421232	Remapped	Pass	NC_000009.12:g.(?_ 42007884)_(4285852 3_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	42,007,884	42,858,523
nssv1421233	Remapped	Pass	NC_000009.12:g.(?_ 42007884)_(4285852 3_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	42,007,884	42,858,523
nssv1421234	Remapped	Pass	NC_000009.12:g.(?_ 42007884)_(4285852 3_?)dup	GRCh38.p12	First Pass	NC_000009.12	Chr9	42,007,884	42,858,523
nssv1421230	Remapped	Pass	NC_000009.11:g.(?_ 43385251)_(4486714 5_?)dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	43,385,251	44,867,145
nssv1421231	Remapped	Pass	NC_000009.11:g.(?_ 43385251)_(4486714 5_?)dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	43,385,251	44,867,145
nssv1421232	Remapped	Pass	NC_000009.11:g.(?_ 43385251)_(4486714 5_?)dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	43,385,251	44,867,145
nssv1421233	Remapped	Pass	NC_000009.11:g.(?_ 43385251)_(4486714 5_?)dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	43,385,251	44,867,145
nssv1421234	Remapped	Pass	NC_000009.11:g.(?_ 43385251)_(4486714 5_?)dup	GRCh37.p13	First Pass	NC_000009.11	Chr9	43,385,251	44,867,145
nssv1421230	Submitted genomic		NC_000009.9:g.(?_4 2671740)_(43945910 _?)dup	NCBI35 (hg17)		NC_000009.9	Chr9	42,671,740	43,945,910
nssv1421231	Submitted genomic		NC_000009.9:g.(?_4 2671740)_(43945910 _?)dup	NCBI35 (hg17)		NC_000009.9	Chr9	42,671,740	43,945,910
nssv1421232	Submitted genomic		NC_000009.9:g.(?_4 2671740)_(43945910 _?)dup	NCBI35 (hg17)		NC_000009.9	Chr9	42,671,740	43,945,910
nssv1421233	Submitted genomic		NC_000009.9:g.(?_4 2671740)_(43945910 _?)dup	NCBI35 (hg17)		NC_000009.9	Chr9	42,671,740	43,945,910
nssv1421234	Submitted genomic		NC_000009.9:g.(?_4 2671740)_(43945910 _?)dup	NCBI35 (hg17)		NC_000009.9	Chr9	42,671,740	43,945,910

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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