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dbVar

Database of genomic structural variation

nsv822814

Organism: Homo sapiens

Study:nstd67 (Park et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:3,208

Publication(s):Park et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 297 SVs from 54 studies. See in: genome view

Remapped(Score: Perfect):164,281,867-164,285,074

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv822814	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000004.12	Chr4	164,281,867	164,285,074
nsv822814	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000004.11	Chr4	165,203,019	165,206,226
nsv822814	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000004.10	Chr4	165,422,469	165,425,676

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1435048	copy number loss	NA18942	Oligo aCGH	Probe signal intensity	712
nssv1439618	copy number gain	NA18547	Oligo aCGH	Probe signal intensity	656

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1435048	Remapped	Perfect	NC_000004.12:g.(?_ 164281867)_(164285 074_?)del	GRCh38.p12	First Pass	NC_000004.12	Chr4	164,281,867	164,285,074
nssv1439618	Remapped	Perfect	NC_000004.12:g.(?_ 164281867)_(164285 074_?)dup	GRCh38.p12	First Pass	NC_000004.12	Chr4	164,281,867	164,285,074
nssv1435048	Remapped	Perfect	NC_000004.11:g.(?_ 165203019)_(165206 226_?)del	GRCh37.p13	First Pass	NC_000004.11	Chr4	165,203,019	165,206,226
nssv1439618	Remapped	Perfect	NC_000004.11:g.(?_ 165203019)_(165206 226_?)dup	GRCh37.p13	First Pass	NC_000004.11	Chr4	165,203,019	165,206,226
nssv1435048	Submitted genomic		NC_000004.10:g.(?_ 165422469)_(165425 676_?)del	NCBI36 (hg18)		NC_000004.10	Chr4	165,422,469	165,425,676
nssv1439618	Submitted genomic		NC_000004.10:g.(?_ 165422469)_(165425 676_?)dup	NCBI36 (hg18)		NC_000004.10	Chr4	165,422,469	165,425,676

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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