nsv823325
- Organism: Homo sapiens
- Study:nstd67 (Park et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,208
- Publication(s):Park et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 176 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 176 SVs from 56 studies. See in: genome view
Overlapping variant regions from other studies: 66 SVs from 18 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv823325 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 155,884,547 | 155,885,754 |
nsv823325 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 155,311,557 | 155,312,764 |
nsv823325 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 155,244,135 | 155,245,342 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1424227 | copy number loss | NA18582 | Oligo aCGH | Probe signal intensity | 637 |
nssv1425782 | copy number loss | AK4 | Oligo aCGH | Probe signal intensity | 712 |
nssv1426683 | copy number loss | AK6 | Oligo aCGH | Probe signal intensity | 714 |
nssv1430598 | copy number loss | AK16 | Oligo aCGH | Probe signal intensity | 590 |
nssv1432061 | copy number gain | AK20 | Oligo aCGH | Probe signal intensity | 768 |
nssv1438161 | copy number loss | NA18951 | Oligo aCGH | Probe signal intensity | 589 |
nssv1438848 | copy number loss | NA18973 | Oligo aCGH | Probe signal intensity | 782 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv1424227 | Remapped | Perfect | NC_000005.10:g.(?_ 155884547)_(155885 754_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 155,884,547 | 155,885,754 |
nssv1425782 | Remapped | Perfect | NC_000005.10:g.(?_ 155884547)_(155885 754_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 155,884,547 | 155,885,754 |
nssv1426683 | Remapped | Perfect | NC_000005.10:g.(?_ 155884547)_(155885 754_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 155,884,547 | 155,885,754 |
nssv1430598 | Remapped | Perfect | NC_000005.10:g.(?_ 155884547)_(155885 754_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 155,884,547 | 155,885,754 |
nssv1432061 | Remapped | Perfect | NC_000005.10:g.(?_ 155884547)_(155885 754_?)dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 155,884,547 | 155,885,754 |
nssv1438161 | Remapped | Perfect | NC_000005.10:g.(?_ 155884547)_(155885 754_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 155,884,547 | 155,885,754 |
nssv1438848 | Remapped | Perfect | NC_000005.10:g.(?_ 155884547)_(155885 754_?)del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 155,884,547 | 155,885,754 |
nssv1424227 | Remapped | Perfect | NC_000005.9:g.(?_1 55311557)_(1553127 64_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,311,557 | 155,312,764 |
nssv1425782 | Remapped | Perfect | NC_000005.9:g.(?_1 55311557)_(1553127 64_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,311,557 | 155,312,764 |
nssv1426683 | Remapped | Perfect | NC_000005.9:g.(?_1 55311557)_(1553127 64_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,311,557 | 155,312,764 |
nssv1430598 | Remapped | Perfect | NC_000005.9:g.(?_1 55311557)_(1553127 64_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,311,557 | 155,312,764 |
nssv1432061 | Remapped | Perfect | NC_000005.9:g.(?_1 55311557)_(1553127 64_?)dup | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,311,557 | 155,312,764 |
nssv1438161 | Remapped | Perfect | NC_000005.9:g.(?_1 55311557)_(1553127 64_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,311,557 | 155,312,764 |
nssv1438848 | Remapped | Perfect | NC_000005.9:g.(?_1 55311557)_(1553127 64_?)del | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 155,311,557 | 155,312,764 |
nssv1424227 | Submitted genomic | NC_000005.8:g.(?_1 55244135)_(1552453 42_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,244,135 | 155,245,342 | ||
nssv1425782 | Submitted genomic | NC_000005.8:g.(?_1 55244135)_(1552453 42_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,244,135 | 155,245,342 | ||
nssv1426683 | Submitted genomic | NC_000005.8:g.(?_1 55244135)_(1552453 42_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,244,135 | 155,245,342 | ||
nssv1430598 | Submitted genomic | NC_000005.8:g.(?_1 55244135)_(1552453 42_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,244,135 | 155,245,342 | ||
nssv1432061 | Submitted genomic | NC_000005.8:g.(?_1 55244135)_(1552453 42_?)dup | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,244,135 | 155,245,342 | ||
nssv1438161 | Submitted genomic | NC_000005.8:g.(?_1 55244135)_(1552453 42_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,244,135 | 155,245,342 | ||
nssv1438848 | Submitted genomic | NC_000005.8:g.(?_1 55244135)_(1552453 42_?)del | NCBI36 (hg18) | NC_000005.8 | Chr5 | 155,244,135 | 155,245,342 |