nsv823825
- Organism: Homo sapiens
- Study:nstd67 (Park et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:8
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1,200
- Publication(s):Park et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 237 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 237 SVs from 57 studies. See in: genome view
Overlapping variant regions from other studies: 107 SVs from 19 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv823825 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nsv823825 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nsv823825 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1423457 | copy number loss | NA18999 | Oligo aCGH | Probe signal intensity | 674 |
| nssv1425817 | copy number loss | AK4 | Oligo aCGH | Probe signal intensity | 712 |
| nssv1429121 | copy number loss | AK12 | Oligo aCGH | Probe signal intensity | 596 |
| nssv1429870 | copy number loss | AK14 | Oligo aCGH | Probe signal intensity | 630 |
| nssv1433705 | copy number loss | NA18526 | Oligo aCGH | Probe signal intensity | 677 |
| nssv1434469 | copy number gain | NA18570 | Oligo aCGH | Probe signal intensity | 629 |
| nssv1435140 | copy number loss | NA18942 | Oligo aCGH | Probe signal intensity | 712 |
| nssv1438886 | copy number loss | NA18973 | Oligo aCGH | Probe signal intensity | 782 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1423457 | Remapped | Perfect | NC_000006.12:g.(?_ 113902649)_(113903 848_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nssv1425817 | Remapped | Perfect | NC_000006.12:g.(?_ 113902649)_(113903 848_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nssv1429121 | Remapped | Perfect | NC_000006.12:g.(?_ 113902649)_(113903 848_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nssv1429870 | Remapped | Perfect | NC_000006.12:g.(?_ 113902649)_(113903 848_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nssv1433705 | Remapped | Perfect | NC_000006.12:g.(?_ 113902649)_(113903 848_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nssv1434469 | Remapped | Perfect | NC_000006.12:g.(?_ 113902649)_(113903 848_?)dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nssv1435140 | Remapped | Perfect | NC_000006.12:g.(?_ 113902649)_(113903 848_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nssv1438886 | Remapped | Perfect | NC_000006.12:g.(?_ 113902649)_(113903 848_?)del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 113,902,649 | 113,903,848 |
| nssv1423457 | Remapped | Perfect | NC_000006.11:g.(?_ 114223813)_(114225 012_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nssv1425817 | Remapped | Perfect | NC_000006.11:g.(?_ 114223813)_(114225 012_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nssv1429121 | Remapped | Perfect | NC_000006.11:g.(?_ 114223813)_(114225 012_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nssv1429870 | Remapped | Perfect | NC_000006.11:g.(?_ 114223813)_(114225 012_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nssv1433705 | Remapped | Perfect | NC_000006.11:g.(?_ 114223813)_(114225 012_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nssv1434469 | Remapped | Perfect | NC_000006.11:g.(?_ 114223813)_(114225 012_?)dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nssv1435140 | Remapped | Perfect | NC_000006.11:g.(?_ 114223813)_(114225 012_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nssv1438886 | Remapped | Perfect | NC_000006.11:g.(?_ 114223813)_(114225 012_?)del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 114,223,813 | 114,225,012 |
| nssv1423457 | Submitted genomic | NC_000006.10:g.(?_ 114330506)_(114331 705_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 | ||
| nssv1425817 | Submitted genomic | NC_000006.10:g.(?_ 114330506)_(114331 705_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 | ||
| nssv1429121 | Submitted genomic | NC_000006.10:g.(?_ 114330506)_(114331 705_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 | ||
| nssv1429870 | Submitted genomic | NC_000006.10:g.(?_ 114330506)_(114331 705_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 | ||
| nssv1433705 | Submitted genomic | NC_000006.10:g.(?_ 114330506)_(114331 705_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 | ||
| nssv1434469 | Submitted genomic | NC_000006.10:g.(?_ 114330506)_(114331 705_?)dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 | ||
| nssv1435140 | Submitted genomic | NC_000006.10:g.(?_ 114330506)_(114331 705_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 | ||
| nssv1438886 | Submitted genomic | NC_000006.10:g.(?_ 114330506)_(114331 705_?)del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 114,330,506 | 114,331,705 |