nsv825037
- Organism: Homo sapiens
- Study:nstd67 (Park et al. 2010)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:15
- Validation:Not tested
- Clinical Assertions: No
- Region Size:5,405
- Publication(s):Park et al. 2010
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 340 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 340 SVs from 64 studies. See in: genome view
Overlapping variant regions from other studies: 146 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv825037 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nsv825037 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nsv825037 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1421883 | copy number loss | NA18997 | Oligo aCGH | Probe signal intensity | 743 |
| nssv1422074 | copy number loss | NA18547 | Oligo aCGH | Probe signal intensity | 656 |
| nssv1422762 | copy number loss | NA18552 | Oligo aCGH | Probe signal intensity | 610 |
| nssv1425143 | copy number loss | AK2 | Oligo aCGH | Probe signal intensity | 614 |
| nssv1425944 | copy number loss | AK4 | Oligo aCGH | Probe signal intensity | 712 |
| nssv1427654 | copy number loss | AK8 | Oligo aCGH | Probe signal intensity | 623 |
| nssv1428261 | copy number loss | NA18947 | Oligo aCGH | Probe signal intensity | 653 |
| nssv1428468 | copy number loss | AK10 | Oligo aCGH | Probe signal intensity | 649 |
| nssv1430739 | copy number loss | AK16 | Oligo aCGH | Probe signal intensity | 590 |
| nssv1435251 | copy number loss | NA18942 | Oligo aCGH | Probe signal intensity | 712 |
| nssv1436006 | copy number loss | NA18566 | Oligo aCGH | Probe signal intensity | 605 |
| nssv1438298 | copy number loss | NA18951 | Oligo aCGH | Probe signal intensity | 589 |
| nssv1439002 | copy number gain | NA18973 | Oligo aCGH | Probe signal intensity | 782 |
| nssv1439822 | copy number loss | NA18537 | Oligo aCGH | Probe signal intensity | 597 |
| nssv1441226 | copy number loss | NA18969 | Oligo aCGH | Probe signal intensity | 898 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv1421883 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1422074 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1422762 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1425143 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1425944 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1427654 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1428261 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1428468 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1430739 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1435251 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1436006 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1438298 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1439002 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)dup | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1439822 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1441226 | Remapped | Perfect | NC_000009.12:g.(?_ 110262381)_(110267 785_?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 110,262,381 | 110,267,785 |
| nssv1421883 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1422074 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1422762 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1425143 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1425944 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1427654 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1428261 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1428468 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1430739 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1435251 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1436006 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1438298 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1439002 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)dup | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1439822 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1441226 | Remapped | Perfect | NC_000009.11:g.(?_ 113024661)_(113030 065_?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 113,024,661 | 113,030,065 |
| nssv1421883 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1422074 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1422762 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1425143 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1425944 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1427654 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1428261 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1428468 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1430739 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1435251 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1436006 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1438298 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1439002 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)dup | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1439822 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 | ||
| nssv1441226 | Submitted genomic | NC_000009.10:g.(?_ 112064482)_(112069 886_?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 112,064,482 | 112,069,886 |