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dbVar

Database of genomic structural variation

nsv825700

Organism: Homo sapiens

Study:nstd67 (Park et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:1,800

Publication(s):Park et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 178 SVs from 42 studies. See in: genome view

Remapped(Score: Perfect):1,884,611-1,886,410

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv825700	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	1,884,611	1,886,410
nsv825700	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	1,905,841	1,907,640
nsv825700	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	1,862,417	1,864,216

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1435306	copy number loss	NA18942	Oligo aCGH	Probe signal intensity	712
nssv1441326	copy number gain	NA18969	Oligo aCGH	Probe signal intensity	898

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1435306	Remapped	Perfect	NC_000011.10:g.(?_ 1884611)_(1886410_ ?)del	GRCh38.p12	First Pass	NC_000011.10	Chr11	1,884,611	1,886,410
nssv1441326	Remapped	Perfect	NC_000011.10:g.(?_ 1884611)_(1886410_ ?)dup	GRCh38.p12	First Pass	NC_000011.10	Chr11	1,884,611	1,886,410
nssv1435306	Remapped	Perfect	NC_000011.9:g.(?_1 905841)_(1907640_? )del	GRCh37.p13	First Pass	NC_000011.9	Chr11	1,905,841	1,907,640
nssv1441326	Remapped	Perfect	NC_000011.9:g.(?_1 905841)_(1907640_? )dup	GRCh37.p13	First Pass	NC_000011.9	Chr11	1,905,841	1,907,640
nssv1435306	Submitted genomic		NC_000011.8:g.(?_1 862417)_(1864216_? )del	NCBI36 (hg18)		NC_000011.8	Chr11	1,862,417	1,864,216
nssv1441326	Submitted genomic		NC_000011.8:g.(?_1 862417)_(1864216_? )dup	NCBI36 (hg18)		NC_000011.8	Chr11	1,862,417	1,864,216

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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