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dbVar

Database of genomic structural variation

nsv827283

Organism: Homo sapiens

Study:nstd67 (Park et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:6,439

Publication(s):Park et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 930 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):32,216,712-32,223,150

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv827283	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000015.10	Chr15	32,216,712	32,223,150
nsv827283	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000015.9	Chr15	32,508,913	32,515,351
nsv827283	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000015.8	Chr15	30,296,205	30,302,643

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1422949	copy number loss	NA18552	Oligo aCGH	Probe signal intensity	610
nssv1423759	copy number gain	NA18999	Oligo aCGH	Probe signal intensity	674
nssv1436176	copy number loss	NA18566	Oligo aCGH	Probe signal intensity	605

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1422949	Remapped	Perfect	NC_000015.10:g.(?_ 32216712)_(3222315 0_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	32,216,712	32,223,150
nssv1423759	Remapped	Perfect	NC_000015.10:g.(?_ 32216712)_(3222315 0_?)dup	GRCh38.p12	First Pass	NC_000015.10	Chr15	32,216,712	32,223,150
nssv1436176	Remapped	Perfect	NC_000015.10:g.(?_ 32216712)_(3222315 0_?)del	GRCh38.p12	First Pass	NC_000015.10	Chr15	32,216,712	32,223,150
nssv1422949	Remapped	Perfect	NC_000015.9:g.(?_3 2508913)_(32515351 _?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	32,508,913	32,515,351
nssv1423759	Remapped	Perfect	NC_000015.9:g.(?_3 2508913)_(32515351 _?)dup	GRCh37.p13	First Pass	NC_000015.9	Chr15	32,508,913	32,515,351
nssv1436176	Remapped	Perfect	NC_000015.9:g.(?_3 2508913)_(32515351 _?)del	GRCh37.p13	First Pass	NC_000015.9	Chr15	32,508,913	32,515,351
nssv1422949	Submitted genomic		NC_000015.8:g.(?_3 0296205)_(30302643 _?)del	NCBI36 (hg18)		NC_000015.8	Chr15	30,296,205	30,302,643
nssv1423759	Submitted genomic		NC_000015.8:g.(?_3 0296205)_(30302643 _?)dup	NCBI36 (hg18)		NC_000015.8	Chr15	30,296,205	30,302,643
nssv1436176	Submitted genomic		NC_000015.8:g.(?_3 0296205)_(30302643 _?)del	NCBI36 (hg18)		NC_000015.8	Chr15	30,296,205	30,302,643

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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