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dbVar

Database of genomic structural variation

nsv828363

Organism: Homo sapiens

Study:nstd67 (Park et al. 2010)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:4,097

Publication(s):Park et al. 2010

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 710 SVs from 60 studies. See in: genome view

Remapped(Score: Perfect):1,009,300-1,013,396

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv828363	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	1,009,300	1,013,396
nsv828363	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	944,680	948,776
nsv828363	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	934,543	938,639

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1434856	copy number loss	NA18942	Oligo aCGH	Probe signal intensity	712
nssv1436320	copy number gain	NA18542	Oligo aCGH	Probe signal intensity	805

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv1434856	Remapped	Perfect	NC_000001.11:g.(?_ 1009300)_(1013396_ ?)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,009,300	1,013,396
nssv1436320	Remapped	Perfect	NC_000001.11:g.(?_ 1009300)_(1013396_ ?)dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	1,009,300	1,013,396
nssv1434856	Remapped	Perfect	NC_000001.10:g.(?_ 944680)_(948776_?) del	GRCh37.p13	First Pass	NC_000001.10	Chr1	944,680	948,776
nssv1436320	Remapped	Perfect	NC_000001.10:g.(?_ 944680)_(948776_?) dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	944,680	948,776
nssv1434856	Submitted genomic		NC_000001.9:g.(?_9 34543)_(938639_?)d el	NCBI36 (hg18)		NC_000001.9	Chr1	934,543	938,639
nssv1436320	Submitted genomic		NC_000001.9:g.(?_9 34543)_(938639_?)d up	NCBI36 (hg18)		NC_000001.9	Chr1	934,543	938,639

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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