nsv8667
- Organism: Homo sapiens
- Study:nstd4 (Perry et al. 2008)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI35 (hg17)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:219,542
- Publication(s):Perry et al. 2008
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 344 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 344 SVs from 33 studies. See in: genome view
Overlapping variant regions from other studies: 1 SVs from 1 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv8667 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000010.11 | Chr10 | 54,043,346 | 54,262,887 |
| nsv8667 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000010.10 | Chr10 | 55,803,106 | 56,022,647 |
| nsv8667 | Submitted genomic | NCBI35 (hg17) | Primary Assembly | NC_000010.8 | Chr10 | 55,473,112 | 55,692,653 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv19867 | copy number loss | NA11830 | Oligo aCGH | Probe signal intensity | 568 |
| nssv21541 | copy number loss | NA19240 | Oligo aCGH | Probe signal intensity | 641 |
| nssv19509 | copy number loss | NA12740 | Oligo aCGH | Probe signal intensity | 572 |
| nssv19398 | copy number loss | NA18564 | Oligo aCGH | Probe signal intensity | 553 |
| nssv19637 | copy number loss | NA18563 | Oligo aCGH | Probe signal intensity | 588 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv19867 | Remapped | Perfect | NC_000010.11:g.(54 043346_54165740)_( 54261760_54262852) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,043,346 | 54,165,740 | 54,261,760 | 54,262,852 |
| nssv21541 | Remapped | Perfect | NC_000010.11:g.(54 043346_54165740)_( 54261760_54262852) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,043,346 | 54,165,740 | 54,261,760 | 54,262,852 |
| nssv19509 | Remapped | Perfect | NC_000010.11:g.(54 043346_54165740)_( 54262853_54262887) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,043,346 | 54,165,740 | 54,262,853 | 54,262,887 |
| nssv19398 | Remapped | Perfect | NC_000010.11:g.(54 225381_54261747)_( 54261760_54262852) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,225,381 | 54,261,747 | 54,261,760 | 54,262,852 |
| nssv19637 | Remapped | Perfect | NC_000010.11:g.(54 225381_54261747)_( 54262852_54262853) del | GRCh38.p12 | First Pass | NC_000010.11 | Chr10 | 54,225,381 | 54,261,747 | 54,262,852 | 54,262,853 |
| nssv19867 | Remapped | Perfect | NC_000010.10:g.(55 803106_55925500)_( 56021520_56022612) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 55,803,106 | 55,925,500 | 56,021,520 | 56,022,612 |
| nssv21541 | Remapped | Perfect | NC_000010.10:g.(55 803106_55925500)_( 56021520_56022612) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 55,803,106 | 55,925,500 | 56,021,520 | 56,022,612 |
| nssv19509 | Remapped | Perfect | NC_000010.10:g.(55 803106_55925500)_( 56022613_56022647) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 55,803,106 | 55,925,500 | 56,022,613 | 56,022,647 |
| nssv19398 | Remapped | Perfect | NC_000010.10:g.(55 985141_56021507)_( 56021520_56022612) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 55,985,141 | 56,021,507 | 56,021,520 | 56,022,612 |
| nssv19637 | Remapped | Perfect | NC_000010.10:g.(55 985141_56021507)_( 56022612_56022613) del | GRCh37.p13 | First Pass | NC_000010.10 | Chr10 | 55,985,141 | 56,021,507 | 56,022,612 | 56,022,613 |
| nssv19867 | Submitted genomic | NC_000010.8:g.(554 73112_55595506)_(5 5691526_55692618)d el | NCBI35 (hg17) | NC_000010.8 | Chr10 | 55,473,112 | 55,595,506 | 55,691,526 | 55,692,618 | ||
| nssv21541 | Submitted genomic | NC_000010.8:g.(554 73112_55595506)_(5 5691526_55692618)d el | NCBI35 (hg17) | NC_000010.8 | Chr10 | 55,473,112 | 55,595,506 | 55,691,526 | 55,692,618 | ||
| nssv19509 | Submitted genomic | NC_000010.8:g.(554 73112_55595506)_(5 5692619_55692653)d el | NCBI35 (hg17) | NC_000010.8 | Chr10 | 55,473,112 | 55,595,506 | 55,692,619 | 55,692,653 | ||
| nssv19398 | Submitted genomic | NC_000010.8:g.(556 55147_55691513)_(5 5691526_55692618)d el | NCBI35 (hg17) | NC_000010.8 | Chr10 | 55,655,147 | 55,691,513 | 55,691,526 | 55,692,618 | ||
| nssv19637 | Submitted genomic | NC_000010.8:g.(556 55147_55691513)_(5 5692618_55692619)d el | NCBI35 (hg17) | NC_000010.8 | Chr10 | 55,655,147 | 55,691,513 | 55,692,618 | 55,692,619 |