nsv869660
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:115,140
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 608 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 608 SVs from 61 studies. See in: genome view
Overlapping variant regions from other studies: 268 SVs from 17 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv869660 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 16,651,180 | 16,659,844 | 16,761,528 | 16,766,319 |
nsv869660 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000005.9 | Chr5 | 16,651,289 | 16,659,953 | 16,761,637 | 16,766,428 |
nsv869660 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000005.8 | Chr5 | 16,704,289 | 16,712,953 | 16,814,637 | 16,819,428 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1496504 | copy number gain | OAT_88 | Oligo aCGH | Probe signal intensity | 12 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1496504 | Remapped | Perfect | NC_000005.10:g.(16 651180_16659844)_( 16761528_16766319) dup | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 16,651,180 | 16,659,844 | 16,761,528 | 16,766,319 |
nssv1496504 | Remapped | Perfect | NC_000005.9:g.(166 51289_16659953)_(1 6761637_16766428)d up | GRCh37.p13 | First Pass | NC_000005.9 | Chr5 | 16,651,289 | 16,659,953 | 16,761,637 | 16,766,428 |
nssv1496504 | Submitted genomic | NC_000005.8:g.(167 04289_16712953)_(1 6814637_16819428)d up | NCBI36 (hg18) | NC_000005.8 | Chr5 | 16,704,289 | 16,712,953 | 16,814,637 | 16,819,428 |