nsv869741
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:5
- Validation:Not tested
- Clinical Assertions: No
- Region Size:154,695
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1188 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1188 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 350 SVs from 25 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv869741 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000007.14 | Chr7 | 101,334,626 | 101,337,416 | 101,483,112 | 101,489,320 |
| nsv869741 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000007.13 | Chr7 | 100,977,907 | 100,980,697 | 101,126,393 | 101,132,601 |
| nsv869741 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000007.12 | Chr7 | 100,764,627 | 100,767,417 | 100,913,113 | 100,919,321 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1496126 | copy number gain | OAT_79 | Oligo aCGH | Probe signal intensity | 11 |
| nssv1497544 | copy number gain | SCOS_04 | Oligo aCGH | Probe signal intensity | 27 |
| nssv1497980 | copy number gain | OAT_73 | Oligo aCGH | Probe signal intensity | 29 |
| nssv1497102 | copy number gain | CONTROL_98 | Oligo aCGH | Probe signal intensity | 16 |
| nssv1497360 | copy number gain | OAT_62 | Oligo aCGH | Probe signal intensity | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1496126 | Remapped | Perfect | NC_000007.14:g.(10 1316371_101323846) _(101483112_101489 320)dup | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 101,316,371 | 101,323,846 | 101,483,112 | 101,489,320 |
| nssv1497544 | Remapped | Perfect | NC_000007.14:g.(10 1316371_101323846) _(101492242_101495 066)dup | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 101,316,371 | 101,323,846 | 101,492,242 | 101,495,066 |
| nssv1497980 | Remapped | Perfect | NC_000007.14:g.(10 1316371_101323846) _(101492242_101495 066)dup | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 101,316,371 | 101,323,846 | 101,492,242 | 101,495,066 |
| nssv1497102 | Remapped | Perfect | NC_000007.14:g.(10 1316371_101323846) _(101495125_101498 655)dup | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 101,316,371 | 101,323,846 | 101,495,125 | 101,498,655 |
| nssv1497360 | Remapped | Perfect | NC_000007.14:g.(10 1334626_101337416) _(101483112_101489 320)dup | GRCh38.p12 | First Pass | NC_000007.14 | Chr7 | 101,334,626 | 101,337,416 | 101,483,112 | 101,489,320 |
| nssv1496126 | Remapped | Perfect | NC_000007.13:g.(10 0959652_100967127) _(101126393_101132 601)dup | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 100,959,652 | 100,967,127 | 101,126,393 | 101,132,601 |
| nssv1497544 | Remapped | Perfect | NC_000007.13:g.(10 0959652_100967127) _(101135523_101138 347)dup | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 100,959,652 | 100,967,127 | 101,135,523 | 101,138,347 |
| nssv1497980 | Remapped | Perfect | NC_000007.13:g.(10 0959652_100967127) _(101135523_101138 347)dup | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 100,959,652 | 100,967,127 | 101,135,523 | 101,138,347 |
| nssv1497102 | Remapped | Perfect | NC_000007.13:g.(10 0959652_100967127) _(101138406_101141 936)dup | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 100,959,652 | 100,967,127 | 101,138,406 | 101,141,936 |
| nssv1497360 | Remapped | Perfect | NC_000007.13:g.(10 0977907_100980697) _(101126393_101132 601)dup | GRCh37.p13 | First Pass | NC_000007.13 | Chr7 | 100,977,907 | 100,980,697 | 101,126,393 | 101,132,601 |
| nssv1496126 | Submitted genomic | NC_000007.12:g.(10 0746372_100753847) _(100913113_100919 321)dup | NCBI36 (hg18) | NC_000007.12 | Chr7 | 100,746,372 | 100,753,847 | 100,913,113 | 100,919,321 | ||
| nssv1497544 | Submitted genomic | NC_000007.12:g.(10 0746372_100753847) _(100922243_100925 067)dup | NCBI36 (hg18) | NC_000007.12 | Chr7 | 100,746,372 | 100,753,847 | 100,922,243 | 100,925,067 | ||
| nssv1497980 | Submitted genomic | NC_000007.12:g.(10 0746372_100753847) _(100922243_100925 067)dup | NCBI36 (hg18) | NC_000007.12 | Chr7 | 100,746,372 | 100,753,847 | 100,922,243 | 100,925,067 | ||
| nssv1497102 | Submitted genomic | NC_000007.12:g.(10 0746372_100753847) _(100925126_100928 656)dup | NCBI36 (hg18) | NC_000007.12 | Chr7 | 100,746,372 | 100,753,847 | 100,925,126 | 100,928,656 | ||
| nssv1497360 | Submitted genomic | NC_000007.12:g.(10 0764627_100767417) _(100913113_100919 321)dup | NCBI36 (hg18) | NC_000007.12 | Chr7 | 100,764,627 | 100,767,417 | 100,913,113 | 100,919,321 |