nsv869882
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:108,605
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 877 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 879 SVs from 75 studies. See in: genome view
Overlapping variant regions from other studies: 407 SVs from 21 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv869882 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 2,249,223 | 2,256,427 | 2,351,440 | 2,357,827 |
| nsv869882 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 2,249,223 | 2,256,427 | 2,351,440 | 2,357,827 |
| nsv869882 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 2,239,223 | 2,246,427 | 2,341,440 | 2,347,827 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1495824 | copy number loss | OAT_89 | Oligo aCGH | Probe signal intensity | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1495824 | Remapped | Perfect | NC_000009.12:g.(22 49223_2256427)_(23 51440_2357827)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 2,249,223 | 2,256,427 | 2,351,440 | 2,357,827 |
| nssv1495824 | Remapped | Perfect | NC_000009.11:g.(22 49223_2256427)_(23 51440_2357827)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 2,249,223 | 2,256,427 | 2,351,440 | 2,357,827 |
| nssv1495824 | Submitted genomic | NC_000009.10:g.(22 39223_2246427)_(23 41440_2347827)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 2,239,223 | 2,246,427 | 2,341,440 | 2,347,827 |