nsv869994
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:303,781
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 3922 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 3926 SVs from 104 studies. See in: genome view
Overlapping variant regions from other studies: 1208 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv869994 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 11,859,450 | 11,868,524 | 12,147,810 | 12,163,230 |
| nsv869994 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 11,859,450 | 11,868,524 | 12,147,810 | 12,163,230 |
| nsv869994 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 11,849,450 | 11,858,524 | 12,137,810 | 12,153,230 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1499026 | copy number loss | OAT_80 | Oligo aCGH | Probe signal intensity | 9 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1499026 | Remapped | Perfect | NC_000009.12:g.(11 859450_11868524)_( 12147810_12163230) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 11,859,450 | 11,868,524 | 12,147,810 | 12,163,230 |
| nssv1499026 | Remapped | Perfect | NC_000009.11:g.(11 859450_11868524)_( 12147810_12163230) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 11,859,450 | 11,868,524 | 12,147,810 | 12,163,230 |
| nssv1499026 | Submitted genomic | NC_000009.10:g.(11 849450_11858524)_( 12137810_12153230) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 11,849,450 | 11,858,524 | 12,137,810 | 12,153,230 |