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dbVar

Database of genomic structural variation

nsv870128

Organism: Homo sapiens

Study:nstd53 (Tuttelmann et al. 2011)
Variant Type:copy number variation
Method Type:Oligo aCGH
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:20,076

Publication(s):Tüttelmann et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 484 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):54,688,926-54,709,001

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv870128	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000010.11	Chr10	54,688,926	54,692,651	54,705,677	54,709,001
nsv870128	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000010.10	Chr10	56,448,686	56,452,411	56,465,437	56,468,761
nsv870128	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000010.9	Chr10	56,118,692	56,122,417	56,135,443	56,138,767

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1496276	copy number loss	CONTROL_83	Oligo aCGH	Probe signal intensity	31
nssv1497766	copy number gain	OAT_74	Oligo aCGH	Probe signal intensity	19
nssv1497860	copy number gain	SCOS_11	Oligo aCGH	Probe signal intensity	28
nssv1498279	copy number gain	CONTROL_99	Oligo aCGH	Probe signal intensity	23
nssv1498489	copy number gain	CONTROL_59	Oligo aCGH	Probe signal intensity	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1496276	Remapped	Perfect	NC_000010.11:g.(54 682360_54688867)_( 54709060_54712648) del	GRCh38.p12	First Pass	NC_000010.11	Chr10	54,682,360	54,688,867	54,709,060	54,712,648
nssv1497766	Remapped	Perfect	NC_000010.11:g.(54 682360_54688867)_( 54709060_54712648) dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	54,682,360	54,688,867	54,709,060	54,712,648
nssv1497860	Remapped	Perfect	NC_000010.11:g.(54 682360_54688867)_( 54709060_54712648) dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	54,682,360	54,688,867	54,709,060	54,712,648
nssv1498279	Remapped	Perfect	NC_000010.11:g.(54 682360_54688867)_( 54709060_54712648) dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	54,682,360	54,688,867	54,709,060	54,712,648
nssv1498489	Remapped	Perfect	NC_000010.11:g.(54 688926_54692651)_( 54705677_54709001) dup	GRCh38.p12	First Pass	NC_000010.11	Chr10	54,688,926	54,692,651	54,705,677	54,709,001
nssv1496276	Remapped	Perfect	NC_000010.10:g.(56 442120_56448627)_( 56468820_56472408) del	GRCh37.p13	First Pass	NC_000010.10	Chr10	56,442,120	56,448,627	56,468,820	56,472,408
nssv1497766	Remapped	Perfect	NC_000010.10:g.(56 442120_56448627)_( 56468820_56472408) dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	56,442,120	56,448,627	56,468,820	56,472,408
nssv1497860	Remapped	Perfect	NC_000010.10:g.(56 442120_56448627)_( 56468820_56472408) dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	56,442,120	56,448,627	56,468,820	56,472,408
nssv1498279	Remapped	Perfect	NC_000010.10:g.(56 442120_56448627)_( 56468820_56472408) dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	56,442,120	56,448,627	56,468,820	56,472,408
nssv1498489	Remapped	Perfect	NC_000010.10:g.(56 448686_56452411)_( 56465437_56468761) dup	GRCh37.p13	First Pass	NC_000010.10	Chr10	56,448,686	56,452,411	56,465,437	56,468,761
nssv1496276	Submitted genomic		NC_000010.9:g.(561 12126_56118633)_(5 6138826_56142414)d el	NCBI36 (hg18)		NC_000010.9	Chr10	56,112,126	56,118,633	56,138,826	56,142,414
nssv1497766	Submitted genomic		NC_000010.9:g.(561 12126_56118633)_(5 6138826_56142414)d up	NCBI36 (hg18)		NC_000010.9	Chr10	56,112,126	56,118,633	56,138,826	56,142,414
nssv1497860	Submitted genomic		NC_000010.9:g.(561 12126_56118633)_(5 6138826_56142414)d up	NCBI36 (hg18)		NC_000010.9	Chr10	56,112,126	56,118,633	56,138,826	56,142,414
nssv1498279	Submitted genomic		NC_000010.9:g.(561 12126_56118633)_(5 6138826_56142414)d up	NCBI36 (hg18)		NC_000010.9	Chr10	56,112,126	56,118,633	56,138,826	56,142,414
nssv1498489	Submitted genomic		NC_000010.9:g.(561 18692_56122417)_(5 6135443_56138767)d up	NCBI36 (hg18)		NC_000010.9	Chr10	56,118,692	56,122,417	56,135,443	56,138,767

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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