nsv870170
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:173,166
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 907 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 911 SVs from 68 studies. See in: genome view
Overlapping variant regions from other studies: 366 SVs from 20 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv870170 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 10,870,385 | 10,882,873 | 11,037,444 | 11,043,550 |
nsv870170 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 10,870,385 | 10,882,873 | 11,037,444 | 11,043,550 |
nsv870170 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 10,860,385 | 10,872,873 | 11,027,444 | 11,033,550 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1497042 | copy number loss | CONTROL_41 | Oligo aCGH | Probe signal intensity | 11 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1497042 | Remapped | Perfect | NC_000009.12:g.(10 870385_10882873)_( 11037444_11043550) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 10,870,385 | 10,882,873 | 11,037,444 | 11,043,550 |
nssv1497042 | Remapped | Perfect | NC_000009.11:g.(10 870385_10882873)_( 11037444_11043550) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 10,870,385 | 10,882,873 | 11,037,444 | 11,043,550 |
nssv1497042 | Submitted genomic | NC_000009.10:g.(10 860385_10872873)_( 11027444_11033550) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 10,860,385 | 10,872,873 | 11,027,444 | 11,033,550 |