nsv870186
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:10
- Validation:Not tested
- Clinical Assertions: No
- Region Size:26,917
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 688 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 691 SVs from 73 studies. See in: genome view
Overlapping variant regions from other studies: 291 SVs from 26 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv870186 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 169,257,965 | 169,261,254 | 169,272,095 | 169,284,881 |
| nsv870186 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 169,227,203 | 169,230,492 | 169,241,333 | 169,254,119 |
| nsv870186 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 167,493,827 | 167,497,116 | 167,507,957 | 167,520,743 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1495900 | copy number loss | SCOS_29 | Oligo aCGH | Probe signal intensity | 16 |
| nssv1496123 | copy number loss | CONTROL_57 | Oligo aCGH | Probe signal intensity | 24 |
| nssv1496725 | copy number loss | OAT_05 | Oligo aCGH | Probe signal intensity | 18 |
| nssv1496944 | copy number loss | SCOS_06 | Oligo aCGH | Probe signal intensity | 30 |
| nssv1497562 | copy number loss | OAT_32 | Oligo aCGH | Probe signal intensity | 18 |
| nssv1498364 | copy number gain | CONTROL_83 | Oligo aCGH | Probe signal intensity | 31 |
| nssv1498631 | copy number loss | OAT_71 | Oligo aCGH | Probe signal intensity | 13 |
| nssv1498812 | copy number loss | CONTROL_71 | Oligo aCGH | Probe signal intensity | 25 |
| nssv1498980 | copy number loss | OAT_33 | Oligo aCGH | Probe signal intensity | 22 |
| nssv1497997 | copy number gain | OAT_73 | Oligo aCGH | Probe signal intensity | 29 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1495900 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1496123 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1496725 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1496944 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1497562 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1498364 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1498631 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1498812 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1498980 | Remapped | Perfect | NC_000001.11:g.(16 9247464_169257906) _(169272095_169284 881)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,247,464 | 169,257,906 | 169,272,095 | 169,284,881 |
| nssv1497997 | Remapped | Perfect | NC_000001.11:g.(16 9257965_169261254) _(169272095_169284 881)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 169,257,965 | 169,261,254 | 169,272,095 | 169,284,881 |
| nssv1495900 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1496123 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1496725 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1496944 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1497562 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1498364 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1498631 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1498812 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1498980 | Remapped | Perfect | NC_000001.10:g.(16 9216702_169227144) _(169241333_169254 119)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,216,702 | 169,227,144 | 169,241,333 | 169,254,119 |
| nssv1497997 | Remapped | Perfect | NC_000001.10:g.(16 9227203_169230492) _(169241333_169254 119)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 169,227,203 | 169,230,492 | 169,241,333 | 169,254,119 |
| nssv1495900 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1496123 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1496725 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1496944 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1497562 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1498364 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1498631 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1498812 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1498980 | Submitted genomic | NC_000001.9:g.(167 483326_167493768)_ (167507957_1675207 43)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,483,326 | 167,493,768 | 167,507,957 | 167,520,743 | ||
| nssv1497997 | Submitted genomic | NC_000001.9:g.(167 493827_167497116)_ (167507957_1675207 43)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 167,493,827 | 167,497,116 | 167,507,957 | 167,520,743 |