nsv870318
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:324,743
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2973 SVs from 106 studies. See in: genome view
Overlapping variant regions from other studies: 2973 SVs from 106 studies. See in: genome view
Overlapping variant regions from other studies: 1850 SVs from 36 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nsv870318 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 162,776,911 | 162,786,975 | 163,094,218 | 163,101,653 |
nsv870318 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 162,494,699 | 162,504,763 | 162,812,006 | 162,819,441 |
nsv870318 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 163,977,393 | 163,987,457 | 164,294,700 | 164,302,135 |
Variant Call Information
Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
---|---|---|---|---|---|
nssv1498086 | copy number loss | CONTROL_28 | Oligo aCGH | Probe signal intensity | 11 |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
---|---|---|---|---|---|---|---|---|---|---|---|
nssv1498086 | Remapped | Perfect | NC_000003.12:g.(16 2776911_162786975) _(163094218_163101 653)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 162,776,911 | 162,786,975 | 163,094,218 | 163,101,653 |
nssv1498086 | Remapped | Perfect | NC_000003.11:g.(16 2494699_162504763) _(162812006_162819 441)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 162,494,699 | 162,504,763 | 162,812,006 | 162,819,441 |
nssv1498086 | Submitted genomic | NC_000003.10:g.(16 3977393_163987457) _(164294700_164302 135)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 163,977,393 | 163,987,457 | 164,294,700 | 164,302,135 |