nsv870441
- Organism: Homo sapiens
- Study:nstd53 (Tuttelmann et al. 2011)
- Variant Type:copy number variation
- Method Type:Oligo aCGH
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:106,636
- Publication(s):Tüttelmann et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2017 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 2021 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 716 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv870441 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 12,074,235 | 12,082,410 | 12,163,289 | 12,180,870 |
| nsv870441 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 12,074,235 | 12,082,410 | 12,163,289 | 12,180,870 |
| nsv870441 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 12,064,235 | 12,072,410 | 12,153,289 | 12,170,870 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1497151 | copy number loss | OAT_71 | Oligo aCGH | Probe signal intensity | 13 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1497151 | Remapped | Perfect | NC_000009.12:g.(12 074235_12082410)_( 12163289_12180870) del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 12,074,235 | 12,082,410 | 12,163,289 | 12,180,870 |
| nssv1497151 | Remapped | Perfect | NC_000009.11:g.(12 074235_12082410)_( 12163289_12180870) del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 12,074,235 | 12,082,410 | 12,163,289 | 12,180,870 |
| nssv1497151 | Submitted genomic | NC_000009.10:g.(12 064235_12072410)_( 12153289_12170870) del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 12,064,235 | 12,072,410 | 12,153,289 | 12,170,870 |