Warning: The NCBI web site requires JavaScript to function. more...

dbVar

Database of genomic structural variation

nsv870705

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:86,422

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 322 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):47,068,033-47,154,454

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv870705	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	47,068,033	47,083,302	47,151,997	47,154,454
nsv870705	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	47,533,705	47,548,974	47,617,669	47,620,126
nsv870705	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	47,306,292	47,321,561	47,390,256	47,392,713

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1550258	copy number gain	MS18377	SNP array	SNP genotyping analysis	8
nssv1559977	copy number gain	MS24245	SNP array	SNP genotyping analysis	11

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1550258	Remapped	Perfect	NC_000001.11:g.(47 068033_47083302)_( 47151997_47154454) dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	47,068,033	47,083,302	47,151,997	47,154,454
nssv1559977	Remapped	Perfect	NC_000001.11:g.(47 068033_47083302)_( 47151997_47154454) dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	47,068,033	47,083,302	47,151,997	47,154,454
nssv1550258	Remapped	Perfect	NC_000001.10:g.(47 533705_47548974)_( 47617669_47620126) dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	47,533,705	47,548,974	47,617,669	47,620,126
nssv1559977	Remapped	Perfect	NC_000001.10:g.(47 533705_47548974)_( 47617669_47620126) dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	47,533,705	47,548,974	47,617,669	47,620,126
nssv1550258	Submitted genomic		NC_000001.9:g.(473 06292_47321561)_(4 7390256_47392713)d up	NCBI36 (hg18)		NC_000001.9	Chr1	47,306,292	47,321,561	47,390,256	47,392,713
nssv1559977	Submitted genomic		NC_000001.9:g.(473 06292_47321561)_(4 7390256_47392713)d up	NCBI36 (hg18)		NC_000001.9	Chr1	47,306,292	47,321,561	47,390,256	47,392,713

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

You are here: NCBI