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dbVar

Database of genomic structural variation

nsv871377

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:5
Validation:Not tested
Clinical Assertions: No
Region Size:153,231

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 485 SVs from 64 studies. See in: genome view

Remapped(Score: Perfect):46,898,221-47,051,451

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv871377	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	46,898,221	46,908,367	47,042,136	47,051,451
nsv871377	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	47,363,893	47,374,039	47,507,808	47,517,123
nsv871377	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	47,136,480	47,146,626	47,280,395	47,289,710

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1535888	copy number gain	MS12539	SNP array	SNP genotyping analysis	14
nssv1539097	copy number gain	MS14157	SNP array	SNP genotyping analysis	8
nssv1548443	copy number gain	MS17849	SNP array	SNP genotyping analysis	12
nssv1559976	copy number gain	MS24245	SNP array	SNP genotyping analysis	11
nssv1561693	copy number gain	MS25190	SNP array	SNP genotyping analysis	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1535888	Remapped	Perfect	NC_000001.11:g.(46 898221_46908367)_( 47042136_47051451) dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	46,898,221	46,908,367	47,042,136	47,051,451
nssv1539097	Remapped	Perfect	NC_000001.11:g.(46 898221_46908367)_( 47042136_47051451) dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	46,898,221	46,908,367	47,042,136	47,051,451
nssv1548443	Remapped	Perfect	NC_000001.11:g.(46 898221_46908367)_( 47042136_47051451) dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	46,898,221	46,908,367	47,042,136	47,051,451
nssv1559976	Remapped	Perfect	NC_000001.11:g.(46 898221_46908367)_( 47042136_47051451) dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	46,898,221	46,908,367	47,042,136	47,051,451
nssv1561693	Remapped	Perfect	NC_000001.11:g.(46 898221_46908367)_( 47042136_47051451) dup	GRCh38.p12	First Pass	NC_000001.11	Chr1	46,898,221	46,908,367	47,042,136	47,051,451
nssv1535888	Remapped	Perfect	NC_000001.10:g.(47 363893_47374039)_( 47507808_47517123) dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	47,363,893	47,374,039	47,507,808	47,517,123
nssv1539097	Remapped	Perfect	NC_000001.10:g.(47 363893_47374039)_( 47507808_47517123) dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	47,363,893	47,374,039	47,507,808	47,517,123
nssv1548443	Remapped	Perfect	NC_000001.10:g.(47 363893_47374039)_( 47507808_47517123) dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	47,363,893	47,374,039	47,507,808	47,517,123
nssv1559976	Remapped	Perfect	NC_000001.10:g.(47 363893_47374039)_( 47507808_47517123) dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	47,363,893	47,374,039	47,507,808	47,517,123
nssv1561693	Remapped	Perfect	NC_000001.10:g.(47 363893_47374039)_( 47507808_47517123) dup	GRCh37.p13	First Pass	NC_000001.10	Chr1	47,363,893	47,374,039	47,507,808	47,517,123
nssv1535888	Submitted genomic		NC_000001.9:g.(471 36480_47146626)_(4 7280395_47289710)d up	NCBI36 (hg18)		NC_000001.9	Chr1	47,136,480	47,146,626	47,280,395	47,289,710
nssv1539097	Submitted genomic		NC_000001.9:g.(471 36480_47146626)_(4 7280395_47289710)d up	NCBI36 (hg18)		NC_000001.9	Chr1	47,136,480	47,146,626	47,280,395	47,289,710
nssv1548443	Submitted genomic		NC_000001.9:g.(471 36480_47146626)_(4 7280395_47289710)d up	NCBI36 (hg18)		NC_000001.9	Chr1	47,136,480	47,146,626	47,280,395	47,289,710
nssv1559976	Submitted genomic		NC_000001.9:g.(471 36480_47146626)_(4 7280395_47289710)d up	NCBI36 (hg18)		NC_000001.9	Chr1	47,136,480	47,146,626	47,280,395	47,289,710
nssv1561693	Submitted genomic		NC_000001.9:g.(471 36480_47146626)_(4 7280395_47289710)d up	NCBI36 (hg18)		NC_000001.9	Chr1	47,136,480	47,146,626	47,280,395	47,289,710

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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