nsv871487
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:70,522
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 232 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 232 SVs from 48 studies. See in: genome view
Overlapping variant regions from other studies: 60 SVs from 10 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv871487 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 22,772,489 | 22,775,195 | 22,840,160 | 22,843,010 |
| nsv871487 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 23,098,982 | 23,101,688 | 23,166,653 | 23,169,503 |
| nsv871487 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 22,971,569 | 22,974,275 | 23,039,240 | 23,042,090 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1529780 | copy number loss | MS10123 | SNP array | SNP genotyping analysis | 152 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1529780 | Remapped | Perfect | NC_000001.11:g.(22 772489_22775195)_( 22840160_22843010) del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 22,772,489 | 22,775,195 | 22,840,160 | 22,843,010 |
| nssv1529780 | Remapped | Perfect | NC_000001.10:g.(23 098982_23101688)_( 23166653_23169503) del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 23,098,982 | 23,101,688 | 23,166,653 | 23,169,503 |
| nssv1529780 | Submitted genomic | NC_000001.9:g.(229 71569_22974275)_(2 3039240_23042090)d el | NCBI36 (hg18) | NC_000001.9 | Chr1 | 22,971,569 | 22,974,275 | 23,039,240 | 23,042,090 |