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dbVar

Database of genomic structural variation

nsv871929

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:73,461

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 432 SVs from 56 studies. See in: genome view

Remapped(Score: Perfect):102,927,901-103,001,361

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv871929	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000001.11	Chr1	102,927,901	102,934,758	102,993,981	103,001,361
nsv871929	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	103,393,457	103,400,314	103,459,537	103,466,917
nsv871929	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000001.9	Chr1	103,166,045	103,172,902	103,232,125	103,239,505

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1536502	copy number loss	MS12827	SNP array	SNP genotyping analysis	60
nssv1570228	copy number loss	IS31837	SNP array	SNP genotyping analysis	34
nssv1594926	copy number loss	IS40067	SNP array	SNP genotyping analysis	96

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1536502	Remapped	Perfect	NC_000001.11:g.(10 2927901_102934758) _(102993981_103001 361)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	102,927,901	102,934,758	102,993,981	103,001,361
nssv1570228	Remapped	Perfect	NC_000001.11:g.(10 2927901_102934758) _(102993981_103001 361)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	102,927,901	102,934,758	102,993,981	103,001,361
nssv1594926	Remapped	Perfect	NC_000001.11:g.(10 2927901_102934758) _(102993981_103001 361)del	GRCh38.p12	First Pass	NC_000001.11	Chr1	102,927,901	102,934,758	102,993,981	103,001,361
nssv1536502	Remapped	Perfect	NC_000001.10:g.(10 3393457_103400314) _(103459537_103466 917)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	103,393,457	103,400,314	103,459,537	103,466,917
nssv1570228	Remapped	Perfect	NC_000001.10:g.(10 3393457_103400314) _(103459537_103466 917)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	103,393,457	103,400,314	103,459,537	103,466,917
nssv1594926	Remapped	Perfect	NC_000001.10:g.(10 3393457_103400314) _(103459537_103466 917)del	GRCh37.p13	First Pass	NC_000001.10	Chr1	103,393,457	103,400,314	103,459,537	103,466,917
nssv1536502	Submitted genomic		NC_000001.9:g.(103 166045_103172902)_ (103232125_1032395 05)del	NCBI36 (hg18)		NC_000001.9	Chr1	103,166,045	103,172,902	103,232,125	103,239,505
nssv1570228	Submitted genomic		NC_000001.9:g.(103 166045_103172902)_ (103232125_1032395 05)del	NCBI36 (hg18)		NC_000001.9	Chr1	103,166,045	103,172,902	103,232,125	103,239,505
nssv1594926	Submitted genomic		NC_000001.9:g.(103 166045_103172902)_ (103232125_1032395 05)del	NCBI36 (hg18)		NC_000001.9	Chr1	103,166,045	103,172,902	103,232,125	103,239,505

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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