nsv871976
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:20
- Validation:Not tested
- Clinical Assertions: No
- Region Size:139,933
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1946 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 1946 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 1137 SVs from 28 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv871976 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nsv871976 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nsv871976 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1522628 | copy number loss | SP53293 | SNP array | SNP genotyping analysis | 9 |
| nssv1526353 | copy number loss | SP57181 | SNP array | SNP genotyping analysis | 11 |
| nssv1528039 | copy number loss | SP81109 | SNP array | SNP genotyping analysis | 15 |
| nssv1529734 | copy number gain | MS10119 | SNP array | SNP genotyping analysis | 12 |
| nssv1530124 | copy number loss | MS10204 | SNP array | SNP genotyping analysis | 23 |
| nssv1539766 | copy number loss | MS14495 | SNP array | SNP genotyping analysis | 16 |
| nssv1542154 | copy number gain | MS15682 | SNP array | SNP genotyping analysis | 13 |
| nssv1544526 | copy number gain | MS16368 | SNP array | SNP genotyping analysis | 11 |
| nssv1544852 | copy number gain | MS16555 | SNP array | SNP genotyping analysis | 5 |
| nssv1547523 | copy number gain | MS17421 | SNP array | SNP genotyping analysis | 8 |
| nssv1562945 | copy number loss | MS25789 | SNP array | SNP genotyping analysis | 16 |
| nssv1571207 | copy number loss | IS32644 | SNP array | SNP genotyping analysis | 17 |
| nssv1571808 | copy number loss | IS32819 | SNP array | SNP genotyping analysis | 14 |
| nssv1576392 | copy number gain | IS34055 | SNP array | SNP genotyping analysis | 13 |
| nssv1578266 | copy number gain | IS34748 | SNP array | SNP genotyping analysis | 22 |
| nssv1593079 | copy number loss | IS39354 | SNP array | SNP genotyping analysis | 13 |
| nssv1593210 | copy number gain | IS39372 | SNP array | SNP genotyping analysis | 10 |
| nssv1599304 | copy number loss | IS41565 | SNP array | SNP genotyping analysis | 7 |
| nssv1600627 | copy number gain | IS41906 | SNP array | SNP genotyping analysis | 21 |
| nssv1601019 | copy number loss | IS41964 | SNP array | SNP genotyping analysis | 58 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1522628 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1526353 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1528039 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1529734 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1530124 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1539766 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1542154 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1544526 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1544852 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1547523 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1562945 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1571207 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1571808 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1576392 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1578266 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1593079 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1593210 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1599304 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1600627 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1601019 | Remapped | Perfect | NC_000001.11:g.(10 3586151_103597390) _(103719276_103726 083)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 103,586,151 | 103,597,390 | 103,719,276 | 103,726,083 |
| nssv1522628 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1526353 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1528039 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1529734 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1530124 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1539766 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1542154 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1544526 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1544852 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1547523 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1562945 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1571207 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1571808 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1576392 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1578266 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1593079 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1593210 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1599304 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1600627 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1601019 | Remapped | Perfect | NC_000001.10:g.(10 4128773_104140012) _(104261898_104268 705)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 104,128,773 | 104,140,012 | 104,261,898 | 104,268,705 |
| nssv1522628 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1526353 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1528039 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1529734 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1530124 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1539766 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1542154 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1544526 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1544852 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1547523 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1562945 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1571207 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1571808 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1576392 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1578266 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1593079 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1593210 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1599304 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1600627 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 | ||
| nssv1601019 | Submitted genomic | NC_000001.9:g.(103 930296_103941535)_ (104063421_1040702 28)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 103,930,296 | 103,941,535 | 104,063,421 | 104,070,228 |