nsv872452
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:18,573
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 157 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 165 SVs from 37 studies. See in: genome view
Overlapping variant regions from other studies: 47 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv872452 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 154,778,513 | 154,780,260 | 154,796,725 | 154,797,085 |
| nsv872452 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 154,750,989 | 154,752,736 | 154,769,201 | 154,769,561 |
| nsv872452 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 153,017,613 | 153,019,360 | 153,035,825 | 153,036,185 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1584073 | copy number gain | IS36798 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1584073 | Remapped | Perfect | NC_000001.11:g.(15 4778513_154780260) _(154796725_154797 085)dup | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 154,778,513 | 154,780,260 | 154,796,725 | 154,797,085 |
| nssv1584073 | Remapped | Perfect | NC_000001.10:g.(15 4750989_154752736) _(154769201_154769 561)dup | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 154,750,989 | 154,752,736 | 154,769,201 | 154,769,561 |
| nssv1584073 | Submitted genomic | NC_000001.9:g.(153 017613_153019360)_ (153035825_1530361 85)dup | NCBI36 (hg18) | NC_000001.9 | Chr1 | 153,017,613 | 153,019,360 | 153,035,825 | 153,036,185 |