nsv872659
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:105,934
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 771 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 771 SVs from 74 studies. See in: genome view
Overlapping variant regions from other studies: 235 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv872659 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 189,242,491 | 189,242,491 | 189,348,424 | 189,348,424 |
| nsv872659 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 189,211,622 | 189,235,248 | 189,313,343 | 189,317,554 |
| nsv872659 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 187,478,245 | 187,501,871 | 187,579,966 | 187,584,177 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1537281 | copy number loss | MS13154 | SNP array | SNP genotyping analysis | 35 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1537281 | Remapped | Good | NC_000001.11:g.(18 9242491_189242491) _(189348424_189348 424)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,242,491 | 189,242,491 | 189,348,424 | 189,348,424 |
| nssv1537281 | Remapped | Perfect | NC_000001.10:g.(18 9211622_189235248) _(189313343_189317 554)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,211,622 | 189,235,248 | 189,313,343 | 189,317,554 |
| nssv1537281 | Submitted genomic | NC_000001.9:g.(187 478245_187501871)_ (187579966_1875841 77)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,478,245 | 187,501,871 | 187,579,966 | 187,584,177 |