nsv872711
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:91,336
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 715 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 715 SVs from 80 studies. See in: genome view
Overlapping variant regions from other studies: 227 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv872711 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nsv872711 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nsv872711 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1552966 | copy number loss | MS19677 | SNP array | SNP genotyping analysis | 15 |
| nssv1572059 | copy number loss | IS32850 | SNP array | SNP genotyping analysis | 9 |
| nssv1574106 | copy number loss | IS33514 | SNP array | SNP genotyping analysis | 56 |
| nssv1576483 | copy number loss | IS34066 | SNP array | SNP genotyping analysis | 13 |
| nssv1576850 | copy number loss | IS34271 | SNP array | SNP genotyping analysis | 11 |
| nssv1577816 | copy number loss | IS34573 | SNP array | SNP genotyping analysis | 23 |
| nssv1578439 | copy number loss | IS34779 | SNP array | SNP genotyping analysis | 22 |
| nssv1583833 | copy number loss | IS36678 | SNP array | SNP genotyping analysis | 9 |
| nssv1585672 | copy number loss | IS37612 | SNP array | SNP genotyping analysis | 9 |
| nssv1586784 | copy number loss | IS37979 | SNP array | SNP genotyping analysis | 10 |
| nssv1587200 | copy number loss | IS37995 | SNP array | SNP genotyping analysis | 15 |
| nssv1588758 | copy number loss | IS38241 | SNP array | SNP genotyping analysis | 16 |
| nssv1589656 | copy number loss | IS38394 | SNP array | SNP genotyping analysis | 9 |
| nssv1590040 | copy number loss | IS38448 | SNP array | SNP genotyping analysis | 8 |
| nssv1593055 | copy number loss | IS39348 | SNP array | SNP genotyping analysis | 10 |
| nssv1594679 | copy number loss | IS39996 | SNP array | SNP genotyping analysis | 14 |
| nssv1600494 | copy number loss | IS41892 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1552966 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1572059 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1574106 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1576483 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1576850 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1577816 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1578439 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1583833 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1585672 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1586784 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1587200 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1588758 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1589656 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1590040 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1593055 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1594679 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1600494 | Remapped | Perfect | NC_000001.11:g.(18 9559813_189567152) _(189639542_189651 148)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,559,813 | 189,567,152 | 189,639,542 | 189,651,148 |
| nssv1552966 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1572059 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1574106 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1576483 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1576850 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1577816 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1578439 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1583833 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1585672 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1586784 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1587200 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1588758 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1589656 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1590040 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1593055 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1594679 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1600494 | Remapped | Perfect | NC_000001.10:g.(18 9528943_189536282) _(189608672_189620 278)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,528,943 | 189,536,282 | 189,608,672 | 189,620,278 |
| nssv1552966 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1572059 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1574106 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1576483 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1576850 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1577816 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1578439 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1583833 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1585672 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1586784 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1587200 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1588758 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1589656 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1590040 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1593055 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1594679 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 | ||
| nssv1600494 | Submitted genomic | NC_000001.9:g.(187 795566_187802905)_ (187875295_1878869 01)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,795,566 | 187,802,905 | 187,875,295 | 187,886,901 |