nsv872726
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:114,951
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 635 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 635 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 219 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv872726 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 189,658,053 | 189,661,593 | 189,772,431 | 189,773,003 |
| nsv872726 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 189,627,183 | 189,630,723 | 189,741,561 | 189,742,133 |
| nsv872726 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 187,893,806 | 187,897,346 | 188,008,184 | 188,008,756 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1536761 | copy number loss | MS12947 | SNP array | SNP genotyping analysis | 22 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1536761 | Remapped | Perfect | NC_000001.11:g.(18 9658053_189661593) _(189772431_189773 003)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 189,658,053 | 189,661,593 | 189,772,431 | 189,773,003 |
| nssv1536761 | Remapped | Perfect | NC_000001.10:g.(18 9627183_189630723) _(189741561_189742 133)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 189,627,183 | 189,630,723 | 189,741,561 | 189,742,133 |
| nssv1536761 | Submitted genomic | NC_000001.9:g.(187 893806_187897346)_ (188008184_1880087 56)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 187,893,806 | 187,897,346 | 188,008,184 | 188,008,756 |