nsv872795
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:782,579
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2431 SVs from 102 studies. See in: genome view
Overlapping variant regions from other studies: 2431 SVs from 102 studies. See in: genome view
Overlapping variant regions from other studies: 731 SVs from 32 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv872795 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 191,167,694 | 191,169,851 | 191,947,913 | 191,950,272 |
| nsv872795 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000001.10 | Chr1 | 191,136,824 | 191,138,981 | 191,917,043 | 191,919,402 |
| nsv872795 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000001.9 | Chr1 | 189,403,447 | 189,405,604 | 190,183,666 | 190,186,025 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1546048 | copy number loss | MS17114 | SNP array | SNP genotyping analysis | 219 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1546048 | Remapped | Perfect | NC_000001.11:g.(19 1167694_191169851) _(191947913_191950 272)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 191,167,694 | 191,169,851 | 191,947,913 | 191,950,272 |
| nssv1546048 | Remapped | Perfect | NC_000001.10:g.(19 1136824_191138981) _(191917043_191919 402)del | GRCh37.p13 | First Pass | NC_000001.10 | Chr1 | 191,136,824 | 191,138,981 | 191,917,043 | 191,919,402 |
| nssv1546048 | Submitted genomic | NC_000001.9:g.(189 403447_189405604)_ (190183666_1901860 25)del | NCBI36 (hg18) | NC_000001.9 | Chr1 | 189,403,447 | 189,405,604 | 190,183,666 | 190,186,025 |