nsv873553
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:62,813
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 779 SVs from 78 studies. See in: genome view
Overlapping variant regions from other studies: 196 SVs from 43 studies. See in: genome view
Overlapping variant regions from other studies: 755 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 292 SVs from 24 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv873553 | Remapped | Pass | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 805,863 | 805,863 | 868,675 | 868,675 |
| nsv873553 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187525.1 | Chr2|NT_18 7525.1 | 81,803 | 81,803 | 136,240 | - |
| nsv873553 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 805,871 | 817,217 | 861,841 | 864,361 |
| nsv873553 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 795,871 | 807,217 | 851,841 | 854,361 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1529784 | copy number loss | MS10123 | SNP array | SNP genotyping analysis | 152 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1529784 | Remapped | Pass | NT_187525.1:g.(818 03_81803)_(136240_ ?)del | GRCh38.p12 | Second Pass | NT_187525.1 | Chr2|NT_18 7525.1 | 81,803 | 81,803 | 136,240 | - |
| nssv1529784 | Remapped | Pass | NC_000002.12:g.(80 5863_805863)_(8686 75_868675)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 805,863 | 805,863 | 868,675 | 868,675 |
| nssv1529784 | Remapped | Perfect | NC_000002.11:g.(80 5871_817217)_(8618 41_864361)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 805,871 | 817,217 | 861,841 | 864,361 |
| nssv1529784 | Submitted genomic | NC_000002.10:g.(79 5871_807217)_(8518 41_854361)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 795,871 | 807,217 | 851,841 | 854,361 |