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dbVar

Database of genomic structural variation

nsv873600

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:65,596

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 339 SVs from 54 studies. See in: genome view

Remapped(Score: Perfect):4,549,471-4,615,066

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv873600	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	4,549,471	4,553,030	4,606,032	4,615,066
nsv873600	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	4,597,061	4,600,620	4,653,622	4,662,656
nsv873600	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	4,574,936	4,578,495	4,631,497	4,640,531

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1566022	copy number loss	IS30562	SNP array	SNP genotyping analysis	16
nssv1582220	copy number loss	IS35862	SNP array	SNP genotyping analysis	16

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1566022	Remapped	Perfect	NC_000002.12:g.(45 49471_4553030)_(46 06032_4615066)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	4,549,471	4,553,030	4,606,032	4,615,066
nssv1582220	Remapped	Perfect	NC_000002.12:g.(45 49471_4553030)_(46 06032_4615066)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	4,549,471	4,553,030	4,606,032	4,615,066
nssv1566022	Remapped	Perfect	NC_000002.11:g.(45 97061_4600620)_(46 53622_4662656)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	4,597,061	4,600,620	4,653,622	4,662,656
nssv1582220	Remapped	Perfect	NC_000002.11:g.(45 97061_4600620)_(46 53622_4662656)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	4,597,061	4,600,620	4,653,622	4,662,656
nssv1566022	Submitted genomic		NC_000002.10:g.(45 74936_4578495)_(46 31497_4640531)del	NCBI36 (hg18)		NC_000002.10	Chr2	4,574,936	4,578,495	4,631,497	4,640,531
nssv1582220	Submitted genomic		NC_000002.10:g.(45 74936_4578495)_(46 31497_4640531)del	NCBI36 (hg18)		NC_000002.10	Chr2	4,574,936	4,578,495	4,631,497	4,640,531

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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