nsv873690
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:252,692
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 860 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 860 SVs from 79 studies. See in: genome view
Overlapping variant regions from other studies: 290 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv873690 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 17,792,171 | 17,792,171 | 18,044,862 | 18,044,862 |
| nsv873690 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 17,973,438 | 17,981,684 | 18,216,417 | 18,226,128 |
| nsv873690 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 17,836,919 | 17,845,165 | 18,079,898 | 18,089,609 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1528900 | copy number gain | SP81388 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1528900 | Remapped | Perfect | NC_000002.12:g.(17 792171_17792171)_( 18044862_18044862) dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 17,792,171 | 17,792,171 | 18,044,862 | 18,044,862 |
| nssv1528900 | Remapped | Perfect | NC_000002.11:g.(17 973438_17981684)_( 18216417_18226128) dup | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 17,973,438 | 17,981,684 | 18,216,417 | 18,226,128 |
| nssv1528900 | Submitted genomic | NC_000002.10:g.(17 836919_17845165)_( 18079898_18089609) dup | NCBI36 (hg18) | NC_000002.10 | Chr2 | 17,836,919 | 17,845,165 | 18,079,898 | 18,089,609 |