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dbVar

Database of genomic structural variation

nsv874269

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:76,269

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 343 SVs from 68 studies. See in: genome view

Remapped(Score: Perfect):73,610,624-73,686,892

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv874269	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	73,610,624	73,619,897	73,680,569	73,686,892
nsv874269	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	73,837,751	73,847,024	73,907,696	73,914,019
nsv874269	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	73,691,259	73,700,532	73,761,204	73,767,527

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1535677	copy number loss	MS12387	SNP array	SNP genotyping analysis	14
nssv1556144	copy number loss	MS21833	SNP array	SNP genotyping analysis	11
nssv1561873	copy number loss	MS25275	SNP array	SNP genotyping analysis	10

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1535677	Remapped	Perfect	NC_000002.12:g.(73 610624_73619897)_( 73680569_73686892) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	73,610,624	73,619,897	73,680,569	73,686,892
nssv1556144	Remapped	Perfect	NC_000002.12:g.(73 610624_73619897)_( 73680569_73686892) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	73,610,624	73,619,897	73,680,569	73,686,892
nssv1561873	Remapped	Perfect	NC_000002.12:g.(73 610624_73619897)_( 73680569_73686892) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	73,610,624	73,619,897	73,680,569	73,686,892
nssv1535677	Remapped	Perfect	NC_000002.11:g.(73 837751_73847024)_( 73907696_73914019) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	73,837,751	73,847,024	73,907,696	73,914,019
nssv1556144	Remapped	Perfect	NC_000002.11:g.(73 837751_73847024)_( 73907696_73914019) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	73,837,751	73,847,024	73,907,696	73,914,019
nssv1561873	Remapped	Perfect	NC_000002.11:g.(73 837751_73847024)_( 73907696_73914019) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	73,837,751	73,847,024	73,907,696	73,914,019
nssv1535677	Submitted genomic		NC_000002.10:g.(73 691259_73700532)_( 73761204_73767527) del	NCBI36 (hg18)		NC_000002.10	Chr2	73,691,259	73,700,532	73,761,204	73,767,527
nssv1556144	Submitted genomic		NC_000002.10:g.(73 691259_73700532)_( 73761204_73767527) del	NCBI36 (hg18)		NC_000002.10	Chr2	73,691,259	73,700,532	73,761,204	73,767,527
nssv1561873	Submitted genomic		NC_000002.10:g.(73 691259_73700532)_( 73761204_73767527) del	NCBI36 (hg18)		NC_000002.10	Chr2	73,691,259	73,700,532	73,761,204	73,767,527

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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