nsv874293
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:68,332
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 292 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 292 SVs from 45 studies. See in: genome view
Overlapping variant regions from other studies: 90 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv874293 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 74,675,463 | 74,679,073 | 74,743,589 | 74,743,794 |
| nsv874293 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 74,902,590 | 74,906,200 | 74,970,716 | 74,970,921 |
| nsv874293 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 74,756,098 | 74,759,708 | 74,824,224 | 74,824,429 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1574761 | copy number gain | IS33622 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1574761 | Remapped | Perfect | NC_000002.12:g.(74 675463_74679073)_( 74743589_74743794) dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 74,675,463 | 74,679,073 | 74,743,589 | 74,743,794 |
| nssv1574761 | Remapped | Perfect | NC_000002.11:g.(74 902590_74906200)_( 74970716_74970921) dup | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 74,902,590 | 74,906,200 | 74,970,716 | 74,970,921 |
| nssv1574761 | Submitted genomic | NC_000002.10:g.(74 756098_74759708)_( 74824224_74824429) dup | NCBI36 (hg18) | NC_000002.10 | Chr2 | 74,756,098 | 74,759,708 | 74,824,224 | 74,824,429 |