nsv874323
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:65,054
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 288 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 288 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 60 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv874323 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 76,821,770 | 76,826,790 | 76,886,034 | 76,886,823 |
| nsv874323 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 77,048,896 | 77,053,916 | 77,113,160 | 77,113,949 |
| nsv874323 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 76,902,404 | 76,907,424 | 76,966,668 | 76,967,457 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1562621 | copy number loss | MS25675 | SNP array | SNP genotyping analysis | 17 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1562621 | Remapped | Perfect | NC_000002.12:g.(76 821770_76826790)_( 76886034_76886823) del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 76,821,770 | 76,826,790 | 76,886,034 | 76,886,823 |
| nssv1562621 | Remapped | Perfect | NC_000002.11:g.(77 048896_77053916)_( 77113160_77113949) del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 77,048,896 | 77,053,916 | 77,113,160 | 77,113,949 |
| nssv1562621 | Submitted genomic | NC_000002.10:g.(76 902404_76907424)_( 76966668_76967457) del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 76,902,404 | 76,907,424 | 76,966,668 | 76,967,457 |