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dbVar

Database of genomic structural variation

nsv874329

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:113,627

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 402 SVs from 55 studies. See in: genome view

Remapped(Score: Perfect):76,868,998-76,982,624

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv874329	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	76,868,998	76,876,593	76,974,790	76,982,624
nsv874329	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	77,096,124	77,103,719	77,201,916	77,209,750
nsv874329	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	76,949,632	76,957,227	77,055,424	77,063,258

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1580165	copy number loss	IS35236	SNP array	SNP genotyping analysis	31
nssv1582312	copy number loss	IS35911	SNP array	SNP genotyping analysis	89
nssv1589238	copy number gain	IS38330	SNP array	SNP genotyping analysis	35

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1580165	Remapped	Perfect	NC_000002.12:g.(76 868998_76876593)_( 76974790_76982624) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	76,868,998	76,876,593	76,974,790	76,982,624
nssv1582312	Remapped	Perfect	NC_000002.12:g.(76 868998_76876593)_( 76974790_76982624) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	76,868,998	76,876,593	76,974,790	76,982,624
nssv1589238	Remapped	Perfect	NC_000002.12:g.(76 868998_76876593)_( 76974790_76982624) dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	76,868,998	76,876,593	76,974,790	76,982,624
nssv1580165	Remapped	Perfect	NC_000002.11:g.(77 096124_77103719)_( 77201916_77209750) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	77,096,124	77,103,719	77,201,916	77,209,750
nssv1582312	Remapped	Perfect	NC_000002.11:g.(77 096124_77103719)_( 77201916_77209750) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	77,096,124	77,103,719	77,201,916	77,209,750
nssv1589238	Remapped	Perfect	NC_000002.11:g.(77 096124_77103719)_( 77201916_77209750) dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	77,096,124	77,103,719	77,201,916	77,209,750
nssv1580165	Submitted genomic		NC_000002.10:g.(76 949632_76957227)_( 77055424_77063258) del	NCBI36 (hg18)		NC_000002.10	Chr2	76,949,632	76,957,227	77,055,424	77,063,258
nssv1582312	Submitted genomic		NC_000002.10:g.(76 949632_76957227)_( 77055424_77063258) del	NCBI36 (hg18)		NC_000002.10	Chr2	76,949,632	76,957,227	77,055,424	77,063,258
nssv1589238	Submitted genomic		NC_000002.10:g.(76 949632_76957227)_( 77055424_77063258) dup	NCBI36 (hg18)		NC_000002.10	Chr2	76,949,632	76,957,227	77,055,424	77,063,258

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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