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dbVar

Database of genomic structural variation

nsv874374

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:37,995

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 199 SVs from 38 studies. See in: genome view

Remapped(Score: Perfect):78,971,494-79,009,488

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv874374	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	78,971,494	78,978,546	79,005,953	79,009,488
nsv874374	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	79,198,620	79,205,672	79,233,079	79,236,614
nsv874374	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	79,052,128	79,059,180	79,086,587	79,090,122

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1588442	copy number loss	IS38199	SNP array	SNP genotyping analysis	7
nssv1595501	copy number loss	IS40240	SNP array	SNP genotyping analysis	11
nssv1596458	copy number loss	IS40521	SNP array	SNP genotyping analysis	10
nssv1597402	copy number loss	IS40801	SNP array	SNP genotyping analysis	12

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1588442	Remapped	Perfect	NC_000002.12:g.(78 971494_78978546)_( 79005953_79009488) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,971,494	78,978,546	79,005,953	79,009,488
nssv1595501	Remapped	Perfect	NC_000002.12:g.(78 971494_78978546)_( 79005953_79009488) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,971,494	78,978,546	79,005,953	79,009,488
nssv1596458	Remapped	Perfect	NC_000002.12:g.(78 971494_78978546)_( 79005953_79009488) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,971,494	78,978,546	79,005,953	79,009,488
nssv1597402	Remapped	Perfect	NC_000002.12:g.(78 971494_78978546)_( 79005953_79009488) del	GRCh38.p12	First Pass	NC_000002.12	Chr2	78,971,494	78,978,546	79,005,953	79,009,488
nssv1588442	Remapped	Perfect	NC_000002.11:g.(79 198620_79205672)_( 79233079_79236614) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	79,198,620	79,205,672	79,233,079	79,236,614
nssv1595501	Remapped	Perfect	NC_000002.11:g.(79 198620_79205672)_( 79233079_79236614) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	79,198,620	79,205,672	79,233,079	79,236,614
nssv1596458	Remapped	Perfect	NC_000002.11:g.(79 198620_79205672)_( 79233079_79236614) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	79,198,620	79,205,672	79,233,079	79,236,614
nssv1597402	Remapped	Perfect	NC_000002.11:g.(79 198620_79205672)_( 79233079_79236614) del	GRCh37.p13	First Pass	NC_000002.11	Chr2	79,198,620	79,205,672	79,233,079	79,236,614
nssv1588442	Submitted genomic		NC_000002.10:g.(79 052128_79059180)_( 79086587_79090122) del	NCBI36 (hg18)		NC_000002.10	Chr2	79,052,128	79,059,180	79,086,587	79,090,122
nssv1595501	Submitted genomic		NC_000002.10:g.(79 052128_79059180)_( 79086587_79090122) del	NCBI36 (hg18)		NC_000002.10	Chr2	79,052,128	79,059,180	79,086,587	79,090,122
nssv1596458	Submitted genomic		NC_000002.10:g.(79 052128_79059180)_( 79086587_79090122) del	NCBI36 (hg18)		NC_000002.10	Chr2	79,052,128	79,059,180	79,086,587	79,090,122
nssv1597402	Submitted genomic		NC_000002.10:g.(79 052128_79059180)_( 79086587_79090122) del	NCBI36 (hg18)		NC_000002.10	Chr2	79,052,128	79,059,180	79,086,587	79,090,122

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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