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dbVar

Database of genomic structural variation

nsv874523

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:149,269

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 760 SVs from 80 studies. See in: genome view

Remapped(Score: Perfect):87,145,886-87,295,154

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv874523	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	87,145,886	87,162,543	87,283,745	87,295,154
nsv874523	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	87,373,009	87,389,666	87,510,868	87,522,277
nsv874523	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	87,226,520	87,243,177	87,364,379	87,375,788

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1507525	copy number gain	SP54581	SNP array	SNP genotyping analysis	19
nssv1519737	copy number gain	SP50522	SNP array	SNP genotyping analysis	13
nssv1527618	copy number gain	SP58575	SNP array	SNP genotyping analysis	15
nssv1580695	copy number gain	IS35431	SNP array	SNP genotyping analysis	11

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1507525	Remapped	Perfect	NC_000002.12:g.(87 145886_87162543)_( 87283745_87295154) dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	87,145,886	87,162,543	87,283,745	87,295,154
nssv1519737	Remapped	Perfect	NC_000002.12:g.(87 145886_87162543)_( 87283745_87295154) dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	87,145,886	87,162,543	87,283,745	87,295,154
nssv1527618	Remapped	Perfect	NC_000002.12:g.(87 145886_87162543)_( 87283745_87295154) dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	87,145,886	87,162,543	87,283,745	87,295,154
nssv1580695	Remapped	Perfect	NC_000002.12:g.(87 145886_87162543)_( 87283745_87295154) dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	87,145,886	87,162,543	87,283,745	87,295,154
nssv1507525	Remapped	Perfect	NC_000002.11:g.(87 373009_87389666)_( 87510868_87522277) dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	87,373,009	87,389,666	87,510,868	87,522,277
nssv1519737	Remapped	Perfect	NC_000002.11:g.(87 373009_87389666)_( 87510868_87522277) dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	87,373,009	87,389,666	87,510,868	87,522,277
nssv1527618	Remapped	Perfect	NC_000002.11:g.(87 373009_87389666)_( 87510868_87522277) dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	87,373,009	87,389,666	87,510,868	87,522,277
nssv1580695	Remapped	Perfect	NC_000002.11:g.(87 373009_87389666)_( 87510868_87522277) dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	87,373,009	87,389,666	87,510,868	87,522,277
nssv1507525	Submitted genomic		NC_000002.10:g.(87 226520_87243177)_( 87364379_87375788) dup	NCBI36 (hg18)		NC_000002.10	Chr2	87,226,520	87,243,177	87,364,379	87,375,788
nssv1519737	Submitted genomic		NC_000002.10:g.(87 226520_87243177)_( 87364379_87375788) dup	NCBI36 (hg18)		NC_000002.10	Chr2	87,226,520	87,243,177	87,364,379	87,375,788
nssv1527618	Submitted genomic		NC_000002.10:g.(87 226520_87243177)_( 87364379_87375788) dup	NCBI36 (hg18)		NC_000002.10	Chr2	87,226,520	87,243,177	87,364,379	87,375,788
nssv1580695	Submitted genomic		NC_000002.10:g.(87 226520_87243177)_( 87364379_87375788) dup	NCBI36 (hg18)		NC_000002.10	Chr2	87,226,520	87,243,177	87,364,379	87,375,788

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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