nsv874697
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:38,363
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 174 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 174 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 48 SVs from 12 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv874697 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 98,904,145 | 98,915,379 | 98,932,691 | 98,942,507 |
| nsv874697 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 99,520,608 | 99,531,842 | 99,549,154 | 99,558,970 |
| nsv874697 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 98,887,040 | 98,898,274 | 98,915,586 | 98,925,402 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1528901 | copy number gain | SP81388 | SNP array | SNP genotyping analysis | 11 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1528901 | Remapped | Perfect | NC_000002.12:g.(98 904145_98915379)_( 98932691_98942507) dup | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 98,904,145 | 98,915,379 | 98,932,691 | 98,942,507 |
| nssv1528901 | Remapped | Perfect | NC_000002.11:g.(99 520608_99531842)_( 99549154_99558970) dup | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 99,520,608 | 99,531,842 | 99,549,154 | 99,558,970 |
| nssv1528901 | Submitted genomic | NC_000002.10:g.(98 887040_98898274)_( 98915586_98925402) dup | NCBI36 (hg18) | NC_000002.10 | Chr2 | 98,887,040 | 98,898,274 | 98,915,586 | 98,925,402 |