nsv874910
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:11
- Validation:Not tested
- Clinical Assertions: No
- Region Size:27,966
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 287 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 287 SVs from 63 studies. See in: genome view
Overlapping variant regions from other studies: 71 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv874910 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nsv874910 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nsv874910 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1537054 | copy number loss | MS13095 | SNP array | SNP genotyping analysis | 158 |
| nssv1538054 | copy number loss | MS13469 | SNP array | SNP genotyping analysis | 15 |
| nssv1539721 | copy number loss | MS14485 | SNP array | SNP genotyping analysis | 31 |
| nssv1541479 | copy number loss | MS15337 | SNP array | SNP genotyping analysis | 10 |
| nssv1552515 | copy number loss | MS19486 | SNP array | SNP genotyping analysis | 12 |
| nssv1552544 | copy number loss | MS19488 | SNP array | SNP genotyping analysis | 15 |
| nssv1553814 | copy number loss | MS20334 | SNP array | SNP genotyping analysis | 13 |
| nssv1556798 | copy number loss | MS22179 | SNP array | SNP genotyping analysis | 15 |
| nssv1557561 | copy number loss | MS22756 | SNP array | SNP genotyping analysis | 14 |
| nssv1561336 | copy number loss | MS24939 | SNP array | SNP genotyping analysis | 7 |
| nssv1582761 | copy number loss | IS36141 | SNP array | SNP genotyping analysis | 8 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1537054 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1538054 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1539721 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1541479 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1552515 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1552544 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1553814 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1556798 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1557561 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1561336 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1582761 | Remapped | Perfect | NC_000002.12:g.(11 4757476_114762628) _(114779214_114785 441)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 114,757,476 | 114,762,628 | 114,779,214 | 114,785,441 |
| nssv1537054 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1538054 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1539721 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1541479 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1552515 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1552544 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1553814 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1556798 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1557561 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1561336 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1582761 | Remapped | Perfect | NC_000002.11:g.(11 5515053_115520205) _(115536791_115543 018)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 115,515,053 | 115,520,205 | 115,536,791 | 115,543,018 |
| nssv1537054 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1538054 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1539721 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1541479 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1552515 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1552544 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1553814 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1556798 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1557561 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1561336 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 | ||
| nssv1582761 | Submitted genomic | NC_000002.10:g.(11 5231523_115236675) _(115253261_115259 488)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 115,231,523 | 115,236,675 | 115,253,261 | 115,259,488 |