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dbVar

Database of genomic structural variation

nsv875061

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:130,773

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 791 SVs from 86 studies. See in: genome view

Remapped(Score: Perfect):130,080,351-130,211,123

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv875061	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	130,080,351	130,128,318	130,195,449	130,211,123
nsv875061	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	130,837,924	130,885,891	130,953,022	130,968,696
nsv875061	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000002.10	Chr2	130,554,394	130,602,361	130,669,492	130,685,166

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1553268	copy number gain	MS19886	SNP array	SNP genotyping analysis	10
nssv1557165	copy number gain	MS22453	SNP array	SNP genotyping analysis	15

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1553268	Remapped	Perfect	NC_000002.12:g.(13 0080351_130128318) _(130195449_130211 123)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	130,080,351	130,128,318	130,195,449	130,211,123
nssv1557165	Remapped	Perfect	NC_000002.12:g.(13 0080351_130128318) _(130195449_130211 123)dup	GRCh38.p12	First Pass	NC_000002.12	Chr2	130,080,351	130,128,318	130,195,449	130,211,123
nssv1553268	Remapped	Perfect	NC_000002.11:g.(13 0837924_130885891) _(130953022_130968 696)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	130,837,924	130,885,891	130,953,022	130,968,696
nssv1557165	Remapped	Perfect	NC_000002.11:g.(13 0837924_130885891) _(130953022_130968 696)dup	GRCh37.p13	First Pass	NC_000002.11	Chr2	130,837,924	130,885,891	130,953,022	130,968,696
nssv1553268	Submitted genomic		NC_000002.10:g.(13 0554394_130602361) _(130669492_130685 166)dup	NCBI36 (hg18)		NC_000002.10	Chr2	130,554,394	130,602,361	130,669,492	130,685,166
nssv1557165	Submitted genomic		NC_000002.10:g.(13 0554394_130602361) _(130669492_130685 166)dup	NCBI36 (hg18)		NC_000002.10	Chr2	130,554,394	130,602,361	130,669,492	130,685,166

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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