nsv875207
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:74,601
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 387 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 387 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 130 SVs from 16 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv875207 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 140,760,083 | 140,775,087 | 140,829,659 | 140,834,683 |
| nsv875207 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 141,517,652 | 141,532,656 | 141,587,228 | 141,592,252 |
| nsv875207 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 141,234,122 | 141,249,126 | 141,303,698 | 141,308,722 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1579393 | copy number loss | IS35100 | SNP array | SNP genotyping analysis | 67 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1579393 | Remapped | Perfect | NC_000002.12:g.(14 0760083_140775087) _(140829659_140834 683)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 140,760,083 | 140,775,087 | 140,829,659 | 140,834,683 |
| nssv1579393 | Remapped | Perfect | NC_000002.11:g.(14 1517652_141532656) _(141587228_141592 252)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 141,517,652 | 141,532,656 | 141,587,228 | 141,592,252 |
| nssv1579393 | Submitted genomic | NC_000002.10:g.(14 1234122_141249126) _(141303698_141308 722)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 141,234,122 | 141,249,126 | 141,303,698 | 141,308,722 |