nsv875208
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:137,743
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 532 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 532 SVs from 62 studies. See in: genome view
Overlapping variant regions from other studies: 177 SVs from 18 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv875208 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 140,900,309 | 140,901,958 | 141,026,194 | 141,038,051 |
| nsv875208 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000002.11 | Chr2 | 141,657,878 | 141,659,527 | 141,783,763 | 141,795,620 |
| nsv875208 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000002.10 | Chr2 | 141,374,348 | 141,375,997 | 141,500,233 | 141,512,090 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1551710 | copy number loss | MS18978 | SNP array | SNP genotyping analysis | 145 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1551710 | Remapped | Perfect | NC_000002.12:g.(14 0900309_140901958) _(141026194_141038 051)del | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 140,900,309 | 140,901,958 | 141,026,194 | 141,038,051 |
| nssv1551710 | Remapped | Perfect | NC_000002.11:g.(14 1657878_141659527) _(141783763_141795 620)del | GRCh37.p13 | First Pass | NC_000002.11 | Chr2 | 141,657,878 | 141,659,527 | 141,783,763 | 141,795,620 |
| nssv1551710 | Submitted genomic | NC_000002.10:g.(14 1374348_141375997) _(141500233_141512 090)del | NCBI36 (hg18) | NC_000002.10 | Chr2 | 141,374,348 | 141,375,997 | 141,500,233 | 141,512,090 |